PungentDB available for ViroBLAST
- Nucleotide sequence databases
- Viroverse
- Local HIV-1 sequence database in Mullins lab.
- Viral genbank
- Viral sequence subset of NCBI genbank. The database is updated biweekly.
- HIV genbank
- HIV sequence subset of NCBI genbank. The database is updated biweekly.
- LANL HIV-1 complete genome (yyyy)
- HIV-1 complete genome sequences from LANL. The year in parentheses is the publish year.
- LANL HIV-1 subtype reference (yyyy)
- HIV-1 subtype reference sequences from LANL. The year in parentheses is the publish year.
- LANL HIV-1 consensus & ancestor (yyyy)
- HIV-1 consensus and ancestral sequences from LANL. The year in parentheses is the publish year.
- Vectors
- Non-redundant vector database (UniVec) of NCBI.
- Protein sequence databases
- Viral protein
- Viral protein sequence subset of NCBI genbank. The database is updated biweekly.
- HIV protein
- HIV protein sequence subset of NCBI genbank. The database is updated biweekly.
- Human protein
- Human protein sequences from NCBI.
- Pan troglodytes protein
- Pan troglodytes protein sequences from NCBI.
- SwissProt
- Last major release of the SWISS-PROT protein sequence database.