BLAST Results
BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Salvia_miltiorrhiza.pep 34,575 sequences; 12,390,255 total letters Query= MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- Length=52 Score E Sequences producing significant alignments: (Bits) Value evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translat... 107 1e-31 evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6... 53.9 4e-11 evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3... 26.2 1.2 evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1... 25.4 1.8 evm.model.scaffold2454.22 gene=EVM%20prediction%20scaffold2454.... 25.4 2.0 evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [transl... 24.6 3.2 evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translat... 24.6 3.5 evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [transl... 24.6 3.6 evm.model.scaffold2571.2 gene=EVM%20prediction%20scaffold2571.2... 24.3 4.2 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translate_table: standard] Length=82 Score = 107 bits (266), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 52/52 (100%), Positives = 52/52 (100%), Gaps = 0/52 (0%) Query 1 DYKKQAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQLSSTDAINRQGVP 52 DYKKQAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQLSSTDAINRQGVP Sbjct 31 DYKKQAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQLSSTDAINRQGVP 82 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6 [translate_table: standard] Length=84 Score = 53.9 bits (128), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 28/44 (64%), Positives = 32/44 (73%), Gaps = 2/44 (5%) Query 1 DYKKQAYGTEGHLQPNPGRGAAASTDAPTT--TAADDPNKQLSS 42 DYK+Q YG +GH QP P RGAA+STDAPT AA DP QLS+ Sbjct 32 DYKQQGYGAQGHQQPQPRRGAASSTDAPTLAGAAATDPQTQLST 75 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3 [translate_table: standard] Length=298 Score = 26.2 bits (56), Expect = 1.2, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Query 11 GHLQPNPGRGAAAST 25 GHL PNPGRG + + Sbjct 119 GHLDPNPGRGCGSGS 133 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1 [translate_table: standard] Length=313 Score = 25.4 bits (54), Expect = 1.8, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Query 11 GHLQPNPGRGAAAST 25 GHL PNPGRG + + Sbjct 49 GHLDPNPGRGCGSES 63 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.scaffold2454.22 gene=EVM%20prediction%20scaffold2454.22 [translate_table: standard] Length=1129 Score = 25.4 bits (54), Expect = 2.0, Method: Composition-based stats. Identities = 13/31 (42%), Positives = 15/31 (48%), Gaps = 0/31 (0%) Query 15 PNPGRGAAASTDAPTTTAADDPNKQLSSTDA 45 PNP R +S + T A DPN SS A Sbjct 32 PNPNRKHKSSKENAPPTPASDPNSMTSSPAA 62 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=246 Score = 24.6 bits (52), Expect = 3.2, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (16%) Query 5 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQLSSTDAINR 48 +A G +G+L P +TDA T + DDPNK++ I + Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKIRKPYTITK 67 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=268 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query 5 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL 40 +A G +G+L P +TDA T + DDPNK++ Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKI 59 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=263 Score = 24.6 bits (52), Expect = 3.6, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query 5 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL 40 +A G +G+L P +TDA T + DDPNK++ Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKI 59 > MEKKQEDEKKTKLQGLPVDTSPYTQYKDLD- on evm.model.scaffold2571.2 gene=EVM%20prediction%20scaffold2571.2 [translate_table: standard] Length=721 Score = 24.3 bits (51), Expect = 4.2, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (14%) Query 3 KKQAYGTEGHLQPNPGRGAAASTD-----APTTTAADDPNKQLSSTDAINR 48 K A G +P P AA TD APTT DP ++ ++I++ Sbjct 7 KDLAKTKTGRQKPKPT--AATGTDQQNSKAPTTKLPQDPQNRMKKENSISK 55 Lambda K H a alpha 0.303 0.122 0.350 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 311198760 Database: Salvia_miltiorrhiza.pep Posted date: Jan 8, 2019 5:21 AM Number of letters in database: 12,390,255 Number of sequences in database: 34,575 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40