BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Salvia_miltiorrhiza.pep
           34,575 sequences; 12,390,255 total letters



Query= MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translat...  47.0    4e-09


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT on evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translate_table: 
standard]
Length=82

 Score = 47.0 bits (110),  Expect = 4e-09, Method: Compositional matrix adjust.
 Identities = 22/22 (100%), Positives = 22/22 (100%), Gaps = 0/22 (0%)

Query  1   TAADDPNKQLSSTDAINRQGVP  22
           TAADDPNKQLSSTDAINRQGVP
Sbjct  61  TAADDPNKQLSSTDAINRQGVP  82



Lambda      K        H        a         alpha
   0.302    0.120    0.325    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 272585610


  Database: Salvia_miltiorrhiza.pep
    Posted date:  Jan 8, 2019  5:21 AM
  Number of letters in database: 12,390,255
  Number of sequences in database:  34,575



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40