BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Salvia_miltiorrhiza.pep
           34,575 sequences; 12,390,255 total letters



Query= MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG

Length=32
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translat...  63.5    4e-15
  evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6...  23.9    2.0  
  evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [transl...  23.5    4.9  
  evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translat...  23.5    4.9  
  evm.model.C222431.13 gene=EVM%20prediction%20C222431.13 [transl...  23.5    5.0  
  evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [transl...  23.5    5.1  


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translate_table: 
standard]
Length=82

 Score = 63.5 bits (153),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%), Gaps = 0/32 (0%)

Query  1   AAASTDAPTTTAADDPNKQLSSTDAINRQGVP  32
           AAASTDAPTTTAADDPNKQLSSTDAINRQGVP
Sbjct  51  AAASTDAPTTTAADDPNKQLSSTDAINRQGVP  82


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6 
[translate_table: standard]
Length=84

 Score = 23.9 bits (50),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 15/24 (63%), Positives = 17/24 (71%), Gaps = 2/24 (8%)

Query  1   AAASTDAPTT--TAADDPNKQLSS  22
           AA+STDAPT    AA DP  QLS+
Sbjct  52  AASSTDAPTLAGAAATDPQTQLST  75


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=263

 Score = 23.5 bits (49),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 0/25 (0%)

Query  4   STDAPTTTAADDPNKQLSSTDAINR  28
           +TDA T +  DDPNK++     I +
Sbjct  43  ATDANTASGVDDPNKKIRKPYTITK  67


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=268

 Score = 23.5 bits (49),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 0/25 (0%)

Query  4   STDAPTTTAADDPNKQLSSTDAINR  28
           +TDA T +  DDPNK++     I +
Sbjct  43  ATDANTASGVDDPNKKIRKPYTITK  67


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.C222431.13 gene=EVM%20prediction%20C222431.13 [translate_table: 
standard]
Length=1133

 Score = 23.5 bits (49),  Expect = 5.0, Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 0/25 (0%)

Query  6    DAPTTTAADDPNKQLSSTDAINRQG  30
            D P+  A +D  KQL   DAI+ +G
Sbjct  387  DPPSFEALEDALKQLYLIDAIDDEG  411


> MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG on evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=246

 Score = 23.5 bits (49),  Expect = 5.1, Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 0/25 (0%)

Query  4   STDAPTTTAADDPNKQLSSTDAINR  28
           +TDA T +  DDPNK++     I +
Sbjct  43  ATDANTASGVDDPNKKIRKPYTITK  67



Lambda      K        H        a         alpha
   0.298    0.112    0.298    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303705750


  Database: Salvia_miltiorrhiza.pep
    Posted date:  Jan 8, 2019  5:21 AM
  Number of letters in database: 12,390,255
  Number of sequences in database:  34,575



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40