BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Lepidium_meyenii.cds
           96,417 sequences; 111,736,531 total letters



Query= 
Length=485
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  evm.model.scaffold80.8  locus=scaffold80:72332:83651:+              35.6    0.99 
  evm.model.scaffold45.874  locus=scaffold45:6857514:6858413:+        35.6    0.99 
  evm.model.scaffold928.173  locus=scaffold928:880567:882798:-        33.7    3.5  
  evm.model.scaffold696.4  locus=scaffold696:155595:160410:+          33.7    3.5  
  evm.model.scaffold36.40  locus=scaffold36:340528:345385:+           33.7    3.5  
  evm.model.scaffold299.955  locus=scaffold299:5063997:5067554:-      33.7    3.5  
  evm.model.scaffold28.89  locus=scaffold28:529091:533920:-           33.7    3.5  
  evm.model.scaffold216.731  locus=scaffold216:3783581:3784015:-      33.7    3.5  


> Query1 on evm.model.scaffold80.8  locus=scaffold80:72332:83651:+
Length=2517

 Score = 35.6 bits (38),  Expect = 0.99
 Identities = 24/26 (92%), Gaps = 1/26 (4%)
 Strand=Plus/Minus

Query  56  GAATTACAGACGAAT-ATGCaaaaaa  80
           ||||||||||||||| || |||||||
Sbjct  83  GAATTACAGACGAATAATACAAAAAA  58


> Query1 on evm.model.scaffold45.874  locus=scaffold45:6857514:6858413:+
Length=900

 Score = 35.6 bits (38),  Expect = 0.99
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Plus

Query  343  TCGAGCTAAAATTGATTATTGTTC  366
            ||||||||| | ||||||||||||
Sbjct  378  TCGAGCTAATAATGATTATTGTTC  401


> Query1 on evm.model.scaffold928.173  locus=scaffold928:880567:882798:-
Length=2139

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  401  ATCAAAGTTTGGATATTT  418
            ||||||||||||||||||
Sbjct  117  ATCAAAGTTTGGATATTT  134


> Query1 on evm.model.scaffold696.4  locus=scaffold696:155595:160410:+
Length=3099

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  150   ATATTCTTGCAGAATTTA  167
             ||||||||||||||||||
Sbjct  2083  ATATTCTTGCAGAATTTA  2066


> Query1 on evm.model.scaffold36.40  locus=scaffold36:340528:345385:+
Length=3102

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  150   ATATTCTTGCAGAATTTA  167
             ||||||||||||||||||
Sbjct  2086  ATATTCTTGCAGAATTTA  2069


> Query1 on evm.model.scaffold299.955  locus=scaffold299:5063997:5067554:-
Length=837

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 20/21 (95%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  310  GATCAGAGAAGGTAGGGTTCC  330
            |||||||||||||| ||||||
Sbjct  231  GATCAGAGAAGGTAAGGTTCC  211


> Query1 on evm.model.scaffold28.89  locus=scaffold28:529091:533920:-
Length=3072

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  150   ATATTCTTGCAGAATTTA  167
             ||||||||||||||||||
Sbjct  2056  ATATTCTTGCAGAATTTA  2039


> Query1 on evm.model.scaffold216.731  locus=scaffold216:3783581:3784015:-
Length=435

 Score = 33.7 bits (36),  Expect = 3.5
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  289  AGAAATTGCACGTATCGAATGGA  311
            ||||| ||||| |||||||||||
Sbjct  57   AGAAAGTGCACTTATCGAATGGA  35



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 49829842735


  Database: Lepidium_meyenii.cds
    Posted date:  Jan 8, 2019  3:56 PM
  Number of letters in database: 111,736,531
  Number of sequences in database:  96,417



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2