BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Panax_ginseng.fa
           56,188 sequences; 2,130,373,199 total letters



Query= SRR13131364.1 FCD243UACXX:6:1101:5513:1974# length=100

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold36142                                                       71.6    4e-11


> scaffold36142
Length=112213

 Score = 71.6 bits (78),  Expect = 4e-11
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Minus

Query  28     ATACCATGGATCTACTCTCATAGCAGCTAGTCTTTCTGG  66
              |||||||||||||||||||||||||||||||||||||||
Sbjct  77567  ATACCATGGATCTACTCTCATAGCAGCTAGTCTTTCTGG  77529


 Score = 64.4 bits (70),  Expect = 6e-09
 Identities = 35/35 (100%), Gaps = 0/35 (0%)
 Strand=Plus/Minus

Query  66     GCCTTCCTGCACTGCATCAAAAATTTGATCTGCCA  100
              |||||||||||||||||||||||||||||||||||
Sbjct  77454  GCCTTCCTGCACTGCATCAAAAATTTGATCTGCCA  77420


 Score = 46.4 bits (50),  Expect = 0.002
 Identities = 28/30 (93%), Gaps = 0/30 (0%)
 Strand=Plus/Minus

Query  1      GAAAAAGTTTATTGCTCGTGCAAAATCATA  30
              |||||| |||||||||||||||||||| ||
Sbjct  77680  GAAAAAATTTATTGCTCGTGCAAAATCGTA  77651



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 151140806037


Query= SRR13131364.2 FCD243UACXX:6:1101:5607:1991# length=100

Length=100
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  scaffold4502                                                         143    8e-33
  scaffold34445                                                       73.4    1e-11
  scaffold29313                                                       68.0    5e-10
  scaffold2640                                                        64.4    6e-09
  scaffold24756                                                       64.4    6e-09
  scaffold14842                                                       64.4    6e-09
  scaffold12122                                                       64.4    6e-09
  C4966173                                                            35.6    3.0  


> scaffold4502
Length=316809

 Score =  143 bits (158),  Expect = 8e-33
 Identities = 79/79 (100%), Gaps = 0/79 (0%)
 Strand=Plus/Plus

Query  1       ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310265  ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  310324

Query  61      CACGGAAGGGCAGGATTCC  79
               |||||||||||||||||||
Sbjct  310325  CACGGAAGGGCAGGATTCC  310343


 Score = 37.4 bits (40),  Expect = 0.86
 Identities = 22/23 (96%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  78      CCATTGTGAGGGAGCTTCGCTGG  100
               ||||||||||||| |||||||||
Sbjct  311342  CCATTGTGAGGGATCTTCGCTGG  311364


> scaffold34445
Length=72241

 Score = 73.4 bits (80),  Expect = 1e-11
 Identities = 52/60 (87%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1      ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
              ||||||||||||||| |  |||||||| || ||||| || || |||||||||||||||||
Sbjct  19700  ATCTGAATAGTACTTAACTGCTACACGCTTTCCTTCAGAGTCCAGAAGAAGAATGTTTTT  19641


> scaffold29313
Length=254734

 Score = 68.0 bits (74),  Expect = 5e-10
 Identities = 51/60 (85%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  1       ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
               ||||||||||||||| |  |||||||| || | ||  || ||||||||||||||||||||
Sbjct  128926  ATCTGAATAGTACTTAACTGCTACACGCTTTCTTTTAGAGTCTAGAAGAAGAATGTTTTT  128985


> scaffold2640
Length=114618

 Score = 64.4 bits (70),  Expect = 6e-09
 Identities = 50/60 (83%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  1      ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
              ||||||||||||||| |  |||||||| || | ||| || || | |||||||||||||||
Sbjct  70291  ATCTGAATAGTACTTAACTGCTACACGCTTTCTTTCAGAGTCCACAAGAAGAATGTTTTT  70350


> scaffold24756
Length=126129

 Score = 64.4 bits (70),  Expect = 6e-09
 Identities = 50/60 (83%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1      ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
              ||||||||| ||||| |  |||||||| || ||||| || || | |||||||||||||||
Sbjct  64256  ATCTGAATAATACTTAACTGCTACACGCTTTCCTTCAGAGTCCAAAAGAAGAATGTTTTT  64197


> scaffold14842
Length=194454

 Score = 64.4 bits (70),  Expect = 6e-09
 Identities = 50/60 (83%), Gaps = 0/60 (0%)
 Strand=Plus/Minus

Query  1       ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
               ||||||||||||||| |  ||||| || || | ||| || || |||||||||||||||||
Sbjct  119808  ATCTGAATAGTACTTAACTGCTACGCGCTTTCTTTCAGAGTCCAGAAGAAGAATGTTTTT  119749


> scaffold12122
Length=47766

 Score = 64.4 bits (70),  Expect = 6e-09
 Identities = 50/60 (83%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  1      ATCTGAATAGTACTTGATAGCTACACGTTTCCCTTCTGAATCTAGAAGAAGAATGTTTTT  60
              ||||||||||||||| |  |||||||| || | ||   | ||||||||||||||||||||
Sbjct  11231  ATCTGAATAGTACTTAACTGCTACACGCTTTCTTTTAAAGTCTAGAAGAAGAATGTTTTT  11290


> C4966173
Length=89103

 Score = 35.6 bits (38),  Expect = 3.0
 Identities = 22/24 (92%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  40     ATCTAGAAGAAGAATGTTTTTCAC  63
              ||||| |||||| |||||||||||
Sbjct  23709  ATCTAAAAGAAGTATGTTTTTCAC  23686



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 151140806037


  Database: Panax_ginseng.fa
    Posted date:  Jan 8, 2019  5:31 PM
  Number of letters in database: 2,130,373,199
  Number of sequences in database:  56,188



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2