BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_officinale.fa 751,466 sequences; 1,446,999,500 total letters Query= RL228e1 Length=156 Score E Sequences producing significant alignments: (Bits) Value scaffold4326 39.2 0.29 scaffold9125 37.4 1.0 scaffold1034 37.4 1.0 scaffold48 37.4 1.0 Scaffold1029461 35.6 3.6 Scaffold402537 35.6 3.6 scaffold32492 35.6 3.6 scaffold8018 35.6 3.6 scaffold6394 35.6 3.6 scaffold4865 35.6 3.6 scaffold3633 35.6 3.6 scaffold2871 35.6 3.6 scaffold2200 35.6 3.6 scaffold2170 35.6 3.6 scaffold283 35.6 3.6 scaffold152 35.6 3.6 scaffold41 35.6 3.6 > RL228e1 on scaffold4326 Length=81209 Score = 39.2 bits (42), Expect = 0.29 Identities = 27/30 (90%), Gaps = 2/30 (7%) Strand=Plus/Plus Query 37 GGACAATGCTAAAACTATAATAGTACAGCT 66 |||||||||||||||||| ||||||| || Sbjct 71382 GGACAATGCTAAAACTAT--TAGTACACCT 71409 > RL228e1 on scaffold9125 Length=42689 Score = 37.4 bits (40), Expect = 1.0 Identities = 26/29 (90%), Gaps = 2/29 (7%) Strand=Plus/Minus Query 37 GGACAATGCTAAAACTATAATAGTACAGC 65 ||||||||||||| ||||| |||||||| Sbjct 20991 GGACAATGCTAAACCTATA--AGTACAGC 20965 > RL228e1 on scaffold1034 Length=186231 Score = 37.4 bits (40), Expect = 1.0 Identities = 29/34 (85%), Gaps = 2/34 (6%) Strand=Plus/Minus Query 38 GACAATGCTAAAACTATAATAGTACAGCTGAAAG 71 |||||||||||| |||| ||||||| |||| || Sbjct 6473 GACAATGCTAAACCTAT--TAGTACACCTGAGAG 6442 > RL228e1 on scaffold48 Length=549104 Score = 37.4 bits (40), Expect = 1.0 Identities = 28/32 (88%), Gaps = 2/32 (6%) Strand=Plus/Minus Query 35 ACGGACAATGCTAAAACTATAATAGTACAGCT 66 ||||||||||||||| || | |||||||||| Sbjct 269977 ACGGACAATGCTAAACCTGT--TAGTACAGCT 269948 Score = 35.6 bits (38), Expect = 3.6 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 99 CCCACAACAATACAAGAAGAAGGATAAGTATAGGACCAG 137 |||||||||||||| | | ||| |||||||| |||| Sbjct 453222 CCCACAACAATACATGTATAAGTTGAAGTATAGTTCCAG 453184 Score = 35.6 bits (38), Expect = 3.6 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 99 CCCACAACAATACAAGAAGAAGGATAAGTATAGGACCAG 137 |||||||||||||| | | ||| |||||||| |||| Sbjct 454315 CCCACAACAATACATGTATAAGTTGAAGTATAGTTCCAG 454277 > RL228e1 on Scaffold1029461 Length=124 Score = 35.6 bits (38), Expect = 3.6 Identities = 31/39 (79%), Gaps = 0/39 (0%) Strand=Plus/Minus Query 113 AGAAGAAGGATAAGTATAGGACCAGGGAGAGCATTTTAT 151 ||||||||||| | ||||| |||| ||| ||||||| Sbjct 103 AGAAGAAGGATCATAATAGGGCCAGAGAGGTAATTTTAT 65 > RL228e1 on Scaffold402537 Length=221 Score = 35.6 bits (38), Expect = 3.6 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 103 CAACAATACAAGAAGAAGGATAAG 126 |||||| |||||||||||||||| Sbjct 42 CAACAAAGCAAGAAGAAGGATAAG 65 > RL228e1 on scaffold32492 Length=8989 Score = 35.6 bits (38), Expect = 3.6 Identities = 40/54 (74%), Gaps = 5/54 (9%) Strand=Plus/Plus Query 76 TGTAGAAATTAATTGTACAAGACCCCACAACAATACAAGAAGAAGGATAAGTAT 129 ||||||||||| |||||||| | ||||||| | || || || |||||| Sbjct 3936 TGTAGAAATTATTTGTACAA-----CTCAACAATGGGATAACAATGACAAGTAT 3984 > RL228e1 on scaffold8018 Length=48397 Score = 35.6 bits (38), Expect = 3.6 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 104 AACAATACAAGAAGAAGGA 122 ||||||||||||||||||| Sbjct 8821 AACAATACAAGAAGAAGGA 8803 > RL228e1 on scaffold6394 Length=60523 Score = 35.6 bits (38), Expect = 3.6 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 95 AGACCCCACAACAATACAAGAAGA 118 ||||| |||| ||||||||||||| Sbjct 6646 AGACCTCACATCAATACAAGAAGA 6623 > RL228e1 on scaffold4865 Length=74587 Score = 35.6 bits (38), Expect = 3.6 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 101 CACAACAATACAAGAAGAAGGATA 124 || |||||||||||||||||| || Sbjct 34544 CAAAACAATACAAGAAGAAGGGTA 34567 > RL228e1 on scaffold3633 Length=91789 Score = 35.6 bits (38), Expect = 3.6 Identities = 24/27 (89%), Gaps = 0/27 (0%) Strand=Plus/Plus Query 112 AAGAAGAAGGATAAGTATAGGACCAGG 138 ||||||||||| ||| || |||||||| Sbjct 78327 AAGAAGAAGGAAAAGAATTGGACCAGG 78353 > RL228e1 on scaffold2871 Length=107583 Score = 35.6 bits (38), Expect = 3.6 Identities = 25/29 (86%), Gaps = 0/29 (0%) Strand=Plus/Minus Query 65 CTGAAAGAACCTGTAGAAATTAATTGTAC 93 ||||||||| ||||||||||| ||| || Sbjct 28961 CTGAAAGAAAATGTAGAAATTATTTGCAC 28933 > RL228e1 on scaffold2200 Length=125387 Score = 35.6 bits (38), Expect = 3.6 Identities = 27/31 (87%), Gaps = 1/31 (3%) Strand=Plus/Minus Query 121 GATAAGTATAGGACCAGGGAGAGCATTTTAT 151 || |||||||||||||| || ||| |||||| Sbjct 116817 GAAAAGTATAGGACCAGTGAAAGC-TTTTAT 116788 > RL228e1 on scaffold2170 Length=126391 Score = 35.6 bits (38), Expect = 3.6 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 48 AAACTATAATAGTACAGCT 66 ||||||||||||||||||| Sbjct 42089 AAACTATAATAGTACAGCT 42071 > RL228e1 on scaffold283 Length=311230 Score = 35.6 bits (38), Expect = 3.6 Identities = 22/24 (92%), Gaps = 0/24 (0%) Strand=Plus/Plus Query 95 AGACCCCACAACAATACAAGAAGA 118 ||||| |||| ||||||||||||| Sbjct 158009 AGACCTCACATCAATACAAGAAGA 158032 > RL228e1 on scaffold152 Length=390060 Score = 35.6 bits (38), Expect = 3.6 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 68 AAAGAACCTGTAGAAATTA 86 ||||||||||||||||||| Sbjct 78671 AAAGAACCTGTAGAAATTA 78653 > RL228e1 on scaffold41 Length=582420 Score = 35.6 bits (38), Expect = 3.6 Identities = 21/22 (95%), Gaps = 0/22 (0%) Strand=Plus/Minus Query 40 CAATGCTAAAACTATAATAGTA 61 ||||||||||||||||||| || Sbjct 387711 CAATGCTAAAACTATAATAATA 387690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179481395520 Database: Dendrobium_officinale.fa Posted date: Jan 8, 2019 11:04 AM Number of letters in database: 1,446,999,500 Number of sequences in database: 751,466 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2