BLAST Results


BLASTP 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Salvia_miltiorrhiza.pep 34,575 sequences; 12,390,255 total letters Query= Length=82 Score E Sequences producing significant alignments: (Bits) Value evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translat... 166 4e-54 evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6... 84.7 2e-22 evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3... 27.3 0.84 evm.model.scaffold7459.17 gene=EVM%20prediction%20scaffold7459.... 27.3 1.1 evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1... 25.4 5.2 evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [transl... 25.0 6.5 evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [transl... 25.0 6.5 evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translat... 25.0 6.5 > Query1 on evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translate_table: standard] Length=82 Score = 166 bits (419), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%) Query 1 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT 60 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT Sbjct 1 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT 60 Query 61 TAADDPNKQLSSTDAINRQGVP 82 TAADDPNKQLSSTDAINRQGVP Sbjct 61 TAADDPNKQLSSTDAINRQGVP 82 > Query1 on evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6 [translate_table: standard] Length=84 Score = 84.7 bits (208), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 3/75 (4%) Query 1 MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPT 59 MEK+Q E++ K L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RGAA+STDAPT Sbjct 1 MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRGAASSTDAPT 60 Query 60 T--TAADDPNKQLSS 72 AA DP QLS+ Sbjct 61 LAGAAATDPQTQLST 75 > Query1 on evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3 [translate_table: standard] Length=298 Score = 27.3 bits (59), Expect = 0.84, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Query 41 GHLQPNPGRGAAAST 55 GHL PNPGRG + + Sbjct 119 GHLDPNPGRGCGSGS 133 > Query1 on evm.model.scaffold7459.17 gene=EVM%20prediction%20scaffold7459.17 [translate_table: standard] Length=343 Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 26/57 (46%), Gaps = 3/57 (5%) Query 7 DEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTTTAA 63 D K + G P + SP+T +DL D+ A G+ G G G+ S D TA Sbjct 231 DGVKCTISGGPYELSPHTAKEDLPDHLNIAQGSAG---STHGWGSNNSMDNELATAC 284 > Query1 on evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1 [translate_table: standard] Length=313 Score = 25.4 bits (54), Expect = 5.2, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Query 41 GHLQPNPGRGAAAST 55 GHL PNPGRG + + Sbjct 49 GHLDPNPGRGCGSES 63 > Query1 on evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=263 Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query 35 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL 70 +A G +G+L P +TDA T + DDPNK++ Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKI 59 > Query1 on evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=246 Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query 35 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL 70 +A G +G+L P +TDA T + DDPNK++ Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKI 59 > Query1 on evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translate_table: standard] Length=268 Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query 35 QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL 70 +A G +G+L P +TDA T + DDPNK++ Sbjct 31 EADGGDGNLLP-------MATDANTASGVDDPNKKI 59 Lambda K H a alpha 0.302 0.123 0.345 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 306175620 Database: Salvia_miltiorrhiza.pep Posted date: Jan 8, 2019 5:21 AM Number of letters in database: 12,390,255 Number of sequences in database: 34,575 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40