BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Glycyrrhiza_uralensis.pep
           38,135 sequences; 13,902,935 total letters



Query= 
Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Glyur008776s00045098.1  protein AED:0.47 eAED:0.62 QI:0|0|0|0.6...   195    4e-65
  Glyur000942s00027137.2  protein AED:0.13 eAED:0.13 QI:113|1|1|1...   202    8e-63
  Glyur000942s00027137.1  protein AED:0.08 eAED:0.08 QI:376|1|1|1...   202    9e-63


> Query1 on Glyur008776s00045098.1  protein AED:0.47 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|104
Length=104

 Score =  195 bits (496),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  60
            IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ
Sbjct  1    IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  60

Query  61   QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  104
            QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ
Sbjct  61   QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  104


> Query1 on Glyur000942s00027137.2  protein AED:0.13 eAED:0.13 QI:113|1|1|1|0.9|0.81|11|215|563
Length=563

 Score =  202 bits (515),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  60
            IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ
Sbjct  460  IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  519

Query  61   QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  104
            QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ
Sbjct  520  QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  563


> Query1 on Glyur000942s00027137.1  protein AED:0.08 eAED:0.08 QI:376|1|1|1|0.72|0.66|12|215|565
Length=565

 Score =  202 bits (514),  Expect = 9e-63, Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  60
            IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ
Sbjct  462  IPNISAGIPSQSLGPRMQFGLSGNNPQRSHASQMLSDQMFNIGGGNPGGMMPIQQQQQQQ  521

Query  61   QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  104
            QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ
Sbjct  522  QHGSQGAFGGMASNTQNLQSGMVTLQNTQQNHPNFSQQRQQNPQ  565



Lambda      K        H        a         alpha
   0.311    0.126    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 344691480


  Database: Glycyrrhiza_uralensis.pep
    Posted date:  Jan 8, 2019  2:47 PM
  Number of letters in database: 13,902,935
  Number of sequences in database:  38,135



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40