BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Salvia_miltiorrhiza.pep
           34,575 sequences; 12,390,255 total letters



Query= 
Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translat...   166    4e-54
  evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6...  84.7    2e-22
  evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3...  27.3    0.84 
  evm.model.scaffold7459.17 gene=EVM%20prediction%20scaffold7459....  27.3    1.1  
  evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1...  25.4    5.2  
  evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [transl...  25.0    6.5  
  evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [transl...  25.0    6.5  
  evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translat...  25.0    6.5  


> evm.model.C153610.1 gene=EVM%20prediction%20C153610.1 [translate_table: 
standard]
Length=82

 Score =  166 bits (419),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT  60
           MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT
Sbjct  1   MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT  60

Query  61  TAADDPNKQLSSTDAINRQGVP  82
           TAADDPNKQLSSTDAINRQGVP
Sbjct  61  TAADDPNKQLSSTDAINRQGVP  82


> evm.model.scaffold4614.6 gene=EVM%20prediction%20scaffold4614.6 
[translate_table: standard]
Length=84

 Score = 84.7 bits (208),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 3/75 (4%)

Query  1   MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPT  59
           MEK+Q E++ K  L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RGAA+STDAPT
Sbjct  1   MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRGAASSTDAPT  60

Query  60  T--TAADDPNKQLSS  72
               AA DP  QLS+
Sbjct  61  LAGAAATDPQTQLST  75


> evm.model.scaffold5738.3 gene=EVM%20prediction%20scaffold5738.3 
[translate_table: standard]
Length=298

 Score = 27.3 bits (59),  Expect = 0.84, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%)

Query  41   GHLQPNPGRGAAAST  55
            GHL PNPGRG  + +
Sbjct  119  GHLDPNPGRGCGSGS  133


> evm.model.scaffold7459.17 gene=EVM%20prediction%20scaffold7459.17 
[translate_table: standard]
Length=343

 Score = 27.3 bits (59),  Expect = 1.1, Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (46%), Gaps = 3/57 (5%)

Query  7    DEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTTTAA  63
            D  K  + G P + SP+T  +DL D+   A G+ G      G G+  S D    TA 
Sbjct  231  DGVKCTISGGPYELSPHTAKEDLPDHLNIAQGSAG---STHGWGSNNSMDNELATAC  284


> evm.model.scaffold8574.1 gene=EVM%20prediction%20scaffold8574.1 
[translate_table: standard]
Length=313

 Score = 25.4 bits (54),  Expect = 5.2, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 0/15 (0%)

Query  41  GHLQPNPGRGAAAST  55
           GHL PNPGRG  + +
Sbjct  49  GHLDPNPGRGCGSES  63


> evm.model.C222331.8.1 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=263

 Score = 25.0 bits (53),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%)

Query  35  QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL  70
           +A G +G+L P        +TDA T +  DDPNK++
Sbjct  31  EADGGDGNLLP-------MATDANTASGVDDPNKKI  59


> evm.model.C222331.8.2 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=246

 Score = 25.0 bits (53),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%)

Query  35  QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL  70
           +A G +G+L P        +TDA T +  DDPNK++
Sbjct  31  EADGGDGNLLP-------MATDANTASGVDDPNKKI  59


> evm.model.C222331.8 gene=EVM%20prediction%20C222331.8 [translate_table: 
standard]
Length=268

 Score = 25.0 bits (53),  Expect = 6.5, Method: Compositional matrix adjust.
 Identities = 14/36 (39%), Positives = 21/36 (58%), Gaps = 7/36 (19%)

Query  35  QAYGTEGHLQPNPGRGAAASTDAPTTTAADDPNKQL  70
           +A G +G+L P        +TDA T +  DDPNK++
Sbjct  31  EADGGDGNLLP-------MATDANTASGVDDPNKKI  59



Lambda      K        H        a         alpha
   0.302    0.123    0.345    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 306175620


  Database: Salvia_miltiorrhiza.pep
    Posted date:  Jan 8, 2019  5:21 AM
  Number of letters in database: 12,390,255
  Number of sequences in database:  34,575



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40