BLAST Results




TBLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Salvia_miltiorrhiza.fa
           28,056 sequences; 659,761,904 total letters



Query= 
Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  C153610                                                              132    1e-36
  C214407                                                              101    2e-24
  scaffold2292                                                        62.4    7e-11
  scaffold4614                                                        62.4    8e-11
  scaffold5654                                                        62.0    1e-10
  scaffold1833                                                        30.4    2.1  


> Query1 on C153610
Length=1140

 Score =  132 bits (331),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)
 Frame = +3

Query  1    MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGaaastdaptt  60
            MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT
Sbjct  396  MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT  575

Query  61   taaddpNKQLSSTDAINRQGVP  82
            TAADDPNKQLSSTDAINRQGVP
Sbjct  576  TAADDPNKQLSSTDAINRQGVP  641


> Query1 on C214407
Length=38211

 Score =  101 bits (252),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 49/50 (98%), Positives = 49/50 (98%), Gaps = 0/50 (0%)
 Frame = +2

Query  1      MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG  50
              MEKKQEDEKK KLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG
Sbjct  16151  MEKKQEDEKKKKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG  16300


> Query1 on scaffold2292
Length=316456

 Score = 62.4 bits (150),  Expect = 7e-11, Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 5/52 (10%)
 Frame = -1

Query  1       MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNP--GRG  50
               MEK+QED+KK   + L VDTSPYT YKDLDDYKK AYG E HLQ  P  GRG
Sbjct  209230  MEKRQEDKKK---KNLLVDTSPYT*YKDLDDYKK*AYGIESHLQSRPRLGRG  209084


> Query1 on scaffold4614
Length=116695

 Score = 62.4 bits (150),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 30/51 (59%), Positives = 40/51 (78%), Gaps = 1/51 (2%)
 Frame = -3

Query  1      MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG  50
              MEK+Q E++ K  L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RG
Sbjct  55871  MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRG  55719


> Query1 on scaffold5654
Length=65456

 Score = 62.0 bits (149),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 30/51 (59%), Positives = 40/51 (78%), Gaps = 1/51 (2%)
 Frame = +3

Query  1     MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG  50
             MEK+Q E++ K  L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RG
Sbjct  5187  MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRG  5339


> Query1 on scaffold1833
Length=390158

 Score = 30.4 bits (67),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 15/42 (36%), Positives = 25/42 (60%), Gaps = 4/42 (10%)
 Frame = -3

Query  11     TKLQGLPVDTSPYTQYKDLDDYKKQ----AYGTEGHLQPNPG  48
              TK++ LP+++SP+ +  DLD+YK          +GHL  + G
Sbjct  39276  TKMKDLPLESSPHLKCTDLDNYKMMIGYTTAAAQGHLCLDGG  39151



Lambda      K        H        a         alpha
   0.304    0.128    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5458036050


  Database: Salvia_miltiorrhiza.fa
    Posted date:  Jan 8, 2019  5:22 AM
  Number of letters in database: 659,761,904
  Number of sequences in database:  28,056



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40