BLAST Results


TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salvia_miltiorrhiza.fa 28,056 sequences; 659,761,904 total letters Query= Length=82 Score E Sequences producing significant alignments: (Bits) Value C153610 132 1e-36 C214407 101 2e-24 scaffold2292 62.4 7e-11 scaffold4614 62.4 8e-11 scaffold5654 62.0 1e-10 scaffold1833 30.4 2.1 > Query1 on C153610 Length=1140 Score = 132 bits (331), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%) Frame = +3 Query 1 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGaaastdaptt 60 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT Sbjct 396 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRGAAASTDAPTT 575 Query 61 taaddpNKQLSSTDAINRQGVP 82 TAADDPNKQLSSTDAINRQGVP Sbjct 576 TAADDPNKQLSSTDAINRQGVP 641 > Query1 on C214407 Length=38211 Score = 101 bits (252), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 49/50 (98%), Positives = 49/50 (98%), Gaps = 0/50 (0%) Frame = +2 Query 1 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG 50 MEKKQEDEKK KLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG Sbjct 16151 MEKKQEDEKKKKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG 16300 > Query1 on scaffold2292 Length=316456 Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/52 (69%), Positives = 39/52 (75%), Gaps = 5/52 (10%) Frame = -1 Query 1 MEKKQEDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNP--GRG 50 MEK+QED+KK + L VDTSPYT YKDLDDYKK AYG E HLQ P GRG Sbjct 209230 MEKRQEDKKK---KNLLVDTSPYT*YKDLDDYKK*AYGIESHLQSRPRLGRG 209084 > Query1 on scaffold4614 Length=116695 Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 30/51 (59%), Positives = 40/51 (78%), Gaps = 1/51 (2%) Frame = -3 Query 1 MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG 50 MEK+Q E++ K L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RG Sbjct 55871 MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRG 55719 > Query1 on scaffold5654 Length=65456 Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/51 (59%), Positives = 40/51 (78%), Gaps = 1/51 (2%) Frame = +3 Query 1 MEKKQ-EDEKKTKLQGLPVDTSPYTQYKDLDDYKKQAYGTEGHLQPNPGRG 50 MEK+Q E++ K L+ + V++SPYTQYKDL+DYK+Q YG +GH QP P RG Sbjct 5187 MEKRQDENQGKGTLEEVVVESSPYTQYKDLEDYKQQGYGAQGHQQPQPRRG 5339 > Query1 on scaffold1833 Length=390158 Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/42 (36%), Positives = 25/42 (60%), Gaps = 4/42 (10%) Frame = -3 Query 11 TKLQGLPVDTSPYTQYKDLDDYKKQ----AYGTEGHLQPNPG 48 TK++ LP+++SP+ + DLD+YK +GHL + G Sbjct 39276 TKMKDLPLESSPHLKCTDLDNYKMMIGYTTAAAQGHLCLDGG 39151 Lambda K H a alpha 0.304 0.128 0.361 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5458036050 Database: Salvia_miltiorrhiza.fa Posted date: Jan 8, 2019 5:22 AM Number of letters in database: 659,761,904 Number of sequences in database: 28,056 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40