BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Glycyrrhiza_uralensis.cds
           38,135 sequences; 41,815,236 total letters



Query= 
Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Glyur000001s00000001.1 gene=Glyur000001s00000001                     168    5e-42
  Glyur001296s00027385.1 gene=Glyur001296s00027385                    33.7    0.27 
  Glyur000495s00023465.1 gene=Glyur000495s00023465                    31.9    0.94 
  Glyur001309s00032168.1 gene=Glyur001309s00032168                    30.1    3.3  


> Query1 on Glyur000001s00000001.1 gene=Glyur000001s00000001
Length=438

 Score =  168 bits (186),  Expect = 5e-42
 Identities = 93/93 (100%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  28   GGTGCACAGAGTCAACTTGTTTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCGGTTGGA  87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTGCACAGAGTCAACTTGTTTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCGGTTGGA  120

Query  88   GCCACCTCTGTGTGCTGTGCTGTTTGCAATGCA  120
            |||||||||||||||||||||||||||||||||
Sbjct  121  GCCACCTCTGTGTGCTGTGCTGTTTGCAATGCA  153


> Query1 on Glyur001296s00027385.1 gene=Glyur001296s00027385
Length=1005

 Score = 33.7 bits (36),  Expect = 0.27
 Identities = 23/26 (88%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  30   TGCACAGAGTCAACTTGTTTGTTCTG  55
            |||| ||||||||||||||  |||||
Sbjct  144  TGCAAAGAGTCAACTTGTTGCTTCTG  169


> Query1 on Glyur000495s00023465.1 gene=Glyur000495s00023465
Length=3198

 Score = 31.9 bits (34),  Expect = 0.94
 Identities = 22/24 (92%), Gaps = 1/24 (4%)
 Strand=Plus/Plus

Query  45    TGTTTGTTCTGGGTGTAGA-AACC  67
             |||||||||||| |||||| ||||
Sbjct  1764  TGTTTGTTCTGGTTGTAGACAACC  1787


> Query1 on Glyur001309s00032168.1 gene=Glyur001309s00032168
Length=1365

 Score = 30.1 bits (32),  Expect = 3.3
 Identities = 19/21 (90%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  37   AGTCAACTTGTTTGTTCTGGG  57
            ||| | |||||||||||||||
Sbjct  128  AGTGAGCTTGTTTGTTCTGGG  108



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 3881876795


  Database: Glycyrrhiza_uralensis.cds
    Posted date:  Jan 8, 2019  2:46 PM
  Number of letters in database: 41,815,236
  Number of sequences in database:  38,135



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2