BLAST Results


TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycyrrhiza_uralensis.fa 12,528 sequences; 378,856,821 total letters Query= Length=104 Score E Sequences producing significant alignments: (Bits) Value Scaffold08776 53.9 4e-08 Scaffold00942 53.1 9e-08 > Query1 on Scaffold08776 Length=2290 Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%) Frame = +3 Query 71 MASNTQNLQSGMVTLQNTQQNHPNFS 96 MASNTQNLQSGMVTLQNTQQNHPNFS Sbjct 1206 MASNTQNLQSGMVTLQNTQQNHPNFS 1283 Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/20 (100%), Positives = 20/20 (100%), Gaps = 0/20 (0%) Frame = +3 Query 18 QFGLSGNNPQRSHASQMLSD 37 QFGLSGNNPQRSHASQMLSD Sbjct 897 QFGLSGNNPQRSHASQMLSD 956 Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/21 (90%), Positives = 19/21 (90%), Gaps = 0/21 (0%) Frame = +2 Query 1 IPNISAGIPSQSLGPRMQFGL 21 IPNISAGIPSQSLGPRMQ L Sbjct 326 IPNISAGIPSQSLGPRMQVCL 388 > Query1 on Scaffold00942 Length=103970 Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%) Frame = +3 Query 71 MASNTQNLQSGMVTLQNTQQNHPNFS 96 MASNTQNLQSGMVTLQNTQQNHPNFS Sbjct 22233 MASNTQNLQSGMVTLQNTQQNHPNFS 22310 Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/20 (100%), Positives = 20/20 (100%), Gaps = 0/20 (0%) Frame = +2 Query 18 QFGLSGNNPQRSHASQMLSD 37 QFGLSGNNPQRSHASQMLSD Sbjct 21929 QFGLSGNNPQRSHASQMLSD 21988 Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/21 (90%), Positives = 19/21 (90%), Gaps = 0/21 (0%) Frame = +3 Query 1 IPNISAGIPSQSLGPRMQFGL 21 IPNISAGIPSQSLGPRMQ L Sbjct 21363 IPNISAGIPSQSLGPRMQVCL 21425 Lambda K H a alpha 0.308 0.121 0.336 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3132397375 Database: Glycyrrhiza_uralensis.fa Posted date: Jan 8, 2019 2:46 PM Number of letters in database: 378,856,821 Number of sequences in database: 12,528 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40