BLAST Results




TBLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Glycyrrhiza_uralensis.fa
           12,528 sequences; 378,856,821 total letters



Query= 
Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Scaffold08776                                                       53.9    4e-08
  Scaffold00942                                                       53.1    9e-08


> Query1 on Scaffold08776
Length=2290

 Score = 53.9 bits (128),  Expect = 4e-08, Method: Compositional matrix adjust.
 Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
 Frame = +3

Query  71    MASNTQNLQSGMVTLQNTQQNHPNFS  96
             MASNTQNLQSGMVTLQNTQQNHPNFS
Sbjct  1206  MASNTQNLQSGMVTLQNTQQNHPNFS  1283


 Score = 43.5 bits (101),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%), Gaps = 0/20 (0%)
 Frame = +3

Query  18   QFGLSGNNPQRSHASQMLSD  37
            QFGLSGNNPQRSHASQMLSD
Sbjct  897  QFGLSGNNPQRSHASQMLSD  956


 Score = 40.0 bits (92),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%), Gaps = 0/21 (0%)
 Frame = +2

Query  1    IPNISAGIPSQSLGPRMQFGL  21
            IPNISAGIPSQSLGPRMQ  L
Sbjct  326  IPNISAGIPSQSLGPRMQVCL  388


> Query1 on Scaffold00942
Length=103970

 Score = 53.1 bits (126),  Expect = 9e-08, Method: Compositional matrix adjust.
 Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
 Frame = +3

Query  71     MASNTQNLQSGMVTLQNTQQNHPNFS  96
              MASNTQNLQSGMVTLQNTQQNHPNFS
Sbjct  22233  MASNTQNLQSGMVTLQNTQQNHPNFS  22310


 Score = 43.5 bits (101),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%), Gaps = 0/20 (0%)
 Frame = +2

Query  18     QFGLSGNNPQRSHASQMLSD  37
              QFGLSGNNPQRSHASQMLSD
Sbjct  21929  QFGLSGNNPQRSHASQMLSD  21988


 Score = 39.7 bits (91),  Expect = 0.001, Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 19/21 (90%), Gaps = 0/21 (0%)
 Frame = +3

Query  1      IPNISAGIPSQSLGPRMQFGL  21
              IPNISAGIPSQSLGPRMQ  L
Sbjct  21363  IPNISAGIPSQSLGPRMQVCL  21425



Lambda      K        H        a         alpha
   0.308    0.121    0.336    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3132397375


  Database: Glycyrrhiza_uralensis.fa
    Posted date:  Jan 8, 2019  2:46 PM
  Number of letters in database: 378,856,821
  Number of sequences in database:  12,528



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40