BLAST Results
TBLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_longifoli.cds 4,584 sequences; 4,086,677 total letters Query= Length=265 Score E Sequences producing significant alignments: (Bits) Value lcl|NZ_CP014768.1_cds_WP_000003071.1_3646 [locus_tag=A0259_RS18... 543 0.0 lcl|NZ_CP014768.1_cds_WP_001295090.1_446 [locus_tag=A0259_RS022... 504 6e-179 lcl|NZ_CP014768.1_cds_WP_000004771.1_475 [locus_tag=A0259_RS024... 114 3e-30 lcl|NZ_CP014768.1_cds_WP_000117881.1_1765 [locus_tag=A0259_RS08... 58.5 1e-10 lcl|NZ_CP014768.1_cds_WP_001258678.1_2732 [locus_tag=A0259_RS13... 56.6 5e-10 lcl|NZ_CP014768.1_cds_WP_000377786.1_18 [locus_tag=A0259_RS0008... 28.5 0.49 lcl|NZ_CP014768.1_cds_WP_001301303.1_150 [locus_tag=A0259_RS007... 27.7 0.72 lcl|NZ_CP014768.1_cds_WP_000535976.1_65 [locus_tag=A0259_RS0034... 25.8 4.3 lcl|NZ_CP014768.1_cds_WP_000832450.1_2335 [locus_tag=A0259_RS11... 25.8 4.9 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000003071.1_3646|NZ_CP014768.1_cds_WP_000003071.1_3646 [locus_tag=A0259_RS18015] [protein=lysine--tRNA ligase] [protein_id=WP_000003071.1] [location=complement(3644643..3646160)] [gbkey=CDS] Length=1518 Score = 543 bits (1398), Expect = 0.0, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%), Gaps = 0/265 (0%) Frame = +1 Query 1 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT 60 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT Sbjct 721 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT 900 Query 61 LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI 120 LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI Sbjct 901 LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI 1080 Query 121 HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG 180 HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG Sbjct 1081 HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG 1260 Query 181 REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID 240 REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID Sbjct 1261 REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID 1440 Query 241 RMVMLFTNSHTIRDVILFPAMRPVK 265 RMVMLFTNSHTIRDVILFPAMRPVK Sbjct 1441 RMVMLFTNSHTIRDVILFPAMRPVK 1515 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_001295090.1_446|NZ_CP014768.1_cds_WP_001295090.1_446 [locus_tag=A0259_RS02285] [protein=lysine--tRNA ligase heat inducible] [protein_id=WP_001295090.1] [location=complement(480683..482200)] [gbkey=CDS] Length=1518 Score = 504 bits (1298), Expect = 6e-179, Method: Compositional matrix adjust. Identities = 244/265 (92%), Positives = 255/265 (96%), Gaps = 0/265 (0%) Frame = +1 Query 1 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT 60 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY DLIELTESLFRT Sbjct 721 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT 900 Query 61 LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI 120 LAQ++LG T+VTYG+ DFGKPFEKLTMREAIKKYRPETDMADLDNFD+AKA+AESIGI Sbjct 901 LAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGI 1080 Query 121 HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG 180 VEKSWGLGRIVTEIF+EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG Sbjct 1081 TVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG 1260 Query 181 REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID 240 REIGNGFSELNDAEDQA+RF +QV AK AGDDEAMFYDEDYVTALE+GLPPTAGLGIGID Sbjct 1261 REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGID 1440 Query 241 RMVMLFTNSHTIRDVILFPAMRPVK 265 RM+MLFTNSHTIRDVILFPAMRP K Sbjct 1441 RMIMLFTNSHTIRDVILFPAMRPQK 1515 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000004771.1_475|NZ_CP014768.1_cds_WP_000004771.1_475 [locus_tag=A0259_RS02425] [protein=elongation factor P--(R)-beta-lysine ligase] [protein_id=WP_000004771.1] [location=510117..511094] [gbkey=CDS] Length=978 Score = 114 bits (285), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/266 (30%), Positives = 135/266 (51%), Gaps = 23/266 (9%) Frame = +1 Query 1 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT 60 E ++KRL+V G VF++ R+FRNE + HNPEFTM+E Y + D L+ + L + Sbjct 232 EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 411 Query 61 LAQDILGKTEVTYGDVTLDFGK--PF--EKLTMREAIKKYRPETDMADLDNFDSAKAIAE 116 + D ++Y L + + P +K +RE K DL N + + Sbjct 412 VL-DCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKL-------DLSNVADTEEDRD 567 Query 117 SIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEF 176 ++ + + ++G + I +E +PTF+ +PA + LA+ + + + +RFE Sbjct 568 TL-LQLLFTFG---VEPNIGKE-------KPTFVYHFPASQASLAQISTEDHRVAERFEV 714 Query 177 FIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLG 236 + G E+ NGF EL DA +Q QRF + A D++ + AL+ G+P +G+ Sbjct 715 YYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVA 894 Query 237 IGIDRMVMLFTNSHTIRDVILFPAMR 262 +G+DR+VML + T+ +VI F R Sbjct 895 LGVDRLVMLALGAETLAEVIAFSVDR 972 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000117881.1_1765|NZ_CP014768.1_cds_WP_000117881.1_1765 [locus_tag=A0259_RS08760] [protein=asparagine--tRNA ligase] [protein_id=WP_000117881.1] [location=complement(1772801..1774201)] [gbkey=CDS] Length=1401 Score = 58.5 bits (140), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/256 (23%), Positives = 109/256 (43%), Gaps = 26/256 (10%) Frame = +1 Query 11 GFERVFEINRNFRNEGISV-RHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKT 69 +++ FR E + RH EF M+E +A+A+ D+ L E++ + + + +L Sbjct 664 ALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVL--- 834 Query 70 EVTYGDVTLDFGKPFEKLTMREAIKKYRP--ETDMADLDNFDSAKAIAESIGIHVEKS-- 125 + D K F + ++A+ + E D A +D + A I E+ G E Sbjct 835 -----EERADDMKFFAERVDKDAVSRLERFIEADFAQVD-YTDAVTILENCGRKFENPVY 996 Query 126 WGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGN 185 WG+ + +E +AE H P + YP ++ R + + + + + Sbjct 997 WGVD-LSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDV------LAP 1155 Query 186 GFSELNDAEDQAQRF--LDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMV 243 G E+ + +R LD+ + + E ++ Y +G P +G G+G +R++ Sbjct 1156 GIGEIIGGSQREERLDVLDERMLEMGLNKEDYWW---YRDLRRYGTVPHSGFGLGFERLI 1326 Query 244 MLFTNSHTIRDVILFP 259 T +RDVI FP Sbjct 1327 AYVTGVQNVRDVIPFP 1374 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_001258678.1_2732|NZ_CP014768.1_cds_WP_001258678.1_2732 [locus_tag=A0259_RS13455] [protein=aspartate--tRNA ligase] [protein_id=WP_001258678.1] [location=complement(2674795..2676567)] [gbkey=CDS] Length=1773 Score = 56.6 bits (135), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/147 (27%), Positives = 66/147 (45%), Gaps = 5/147 (3%) Frame = +1 Query 114 IAESIGIHVEKSWG-LGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITD 172 + + +G+ E W L I +FE+ E L P +++ + + + Sbjct 1237 VGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVAN 1416 Query 173 RFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPT 232 ++ I G E+G G +++ D Q + + E + + AL++G PP Sbjct 1417 AYDMVINGYEVGGGSVRIHNG-DMQQTVFGILGINEEEQREKFGF---LLDALKYGTPPH 1584 Query 233 AGLGIGIDRMVMLFTNSHTIRDVILFP 259 AGL G+DR+ ML T + IRDVI FP Sbjct 1585 AGLAFGLDRLTMLLTGTDNIRDVIAFP 1665 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/107 (29%), Positives = 56/107 (52%), Gaps = 13/107 (12%) Frame = +1 Query 1 ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT 60 +L+ + L++ GF+R ++I + FR+E + PEFT +++ ++ + E+ E+L R Sbjct 583 QLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRH 762 Query 61 LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDN 107 L ++ G V GD F +T EA ++Y +D DL N Sbjct 763 LWLEVKG---VDLGD--------FPVMTFAEAERRY--GSDKPDLRN 864 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000377786.1_18|NZ_CP014768.1_cds_WP_000377786.1_18 [locus_tag=A0259_RS00085] [protein=phosphate-specific transport system accessory protein PhoU] [protein_id=WP_000377786.1] [location=complement(17491..18216)] [gbkey=CDS] Length=726 Score = 28.5 bits (62), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/54 (30%), Positives = 27/54 (50%), Gaps = 0/54 (0%) Frame = -1 Query 182 EIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGL 235 ++GNGF++ ++ A+R L AG + F+ D + A +H L A L Sbjct 297 QLGNGFTDHHNQSQVARRRLTFGDNAHAGFIDRHFHHVDVLVAFDHALRQIAVL 136 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_001301303.1_150|NZ_CP014768.1_cds_WP_001301303.1_150 [locus_tag=A0259_RS00785] [protein=IMPACT family member YigZ] [protein_id=WP_001301303.1] [location=159703..160317] [gbkey=CDS] Length=615 Score = 27.7 bits (60), Expect = 0.72, Method: Compositional matrix adjust. Identities = 15/36 (42%), Positives = 21/36 (58%), Gaps = 0/36 (0%) Frame = +1 Query 83 PFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESI 118 P +T+ E IKK R T +A D ++AKA ES+ Sbjct 19 PAAPVTVVEEIKKSRFITLLAHTDGVEAAKAFVESV 126 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000535976.1_65|NZ_CP014768.1_cds_WP_000535976.1_65 [locus_tag=A0259_RS00345] [protein=guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase] [protein_id=WP_000535976.1] [location=complement(73386..74870)] [gbkey=CDS] Length=1485 Score = 25.8 bits (55), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%) Frame = +1 Query 71 VTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGR 130 + YG + L + T+R +++ M D+D +A + VEK W L Sbjct 883 LVYGMLHLTVEQDIRSRTLRNIQRRF-----MIDIDQAQRVAKVAANFFDQVEKEWHLEA 1047 Query 131 IVTEIFEEVAEAHLIQPTF-ITEYPAEVSPLARRNDV 166 I ++ + H I + + P + L R D+ Sbjct 1048 ISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDL 1158 > Query1 on lcl|>Query1 on lcl|NZ_CP014768.1_cds_WP_000832450.1_2335|NZ_CP014768.1_cds_WP_000832450.1_2335 [locus_tag=A0259_RS11530] [protein=TonB dependent receptor] [protein_id=WP_000832450.1] [location=complement(2310855..2313227)] [gbkey=CDS] Length=2373 Score = 25.8 bits (55), Expect = 4.9, Method: Compositional matrix adjust. Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 0/35 (0%) Frame = +1 Query 162 RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQ 196 R+ D+NP+I + G + NG+ E N ++Q Sbjct 1849 RQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQ 1953 Lambda K H a alpha 0.320 0.139 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 180499671 Database: Mentha_longifoli.cds Posted date: Jan 8, 2019 3:09 AM Number of letters in database: 4,086,677 Number of sequences in database: 4,584 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40