BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Mentha_longifoli.fa
           4,329 sequences; 1,311,348 total letters



Query= 
Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  WP_000003071.1 MULTISPECIES: lysine--tRNA ligase [Proteobacteria]    543    0.0   
  WP_001295090.1 MULTISPECIES: lysine--tRNA ligase heat inducible...   504    4e-179
  WP_000004771.1 MULTISPECIES: elongation factor P--(R)-beta-lysi...   114    2e-30 
  WP_000117881.1 MULTISPECIES: asparagine--tRNA ligase [Proteobac...  58.5    1e-10 
  WP_001258678.1 MULTISPECIES: aspartate--tRNA ligase [Enterobact...  56.6    4e-10 
  WP_001301303.1 MULTISPECIES: IMPACT family member YigZ [Enterob...  27.7    0.66  
  WP_000832450.1 MULTISPECIES: TonB dependent receptor [Enterobac...  25.4    4.8   
  WP_000535976.1 MULTISPECIES: guanosine-5'-triphosphate,3'-dipho...  25.4    4.9   
  WP_000069410.1 MULTISPECIES: phosphoenolpyruvate synthase [Ente...  24.6    8.3   
  WP_000280494.1 MULTISPECIES: bifunctional GTP diphosphokinase/g...  24.6    8.5   


> WP_000003071.1 MULTISPECIES: lysine--tRNA ligase [Proteobacteria]
Length=505

 Score =  543 bits (1400),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 265/265 (100%), Positives = 265/265 (100%), Gaps = 0/265 (0%)

Query  1    ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT  60
            ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT
Sbjct  241  ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT  300

Query  61   LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI  120
            LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI
Sbjct  301  LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI  360

Query  121  HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG  180
            HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG
Sbjct  361  HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG  420

Query  181  REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID  240
            REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID
Sbjct  421  REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID  480

Query  241  RMVMLFTNSHTIRDVILFPAMRPVK  265
            RMVMLFTNSHTIRDVILFPAMRPVK
Sbjct  481  RMVMLFTNSHTIRDVILFPAMRPVK  505


> WP_001295090.1 MULTISPECIES: lysine--tRNA ligase heat inducible 
[Enterobacteriaceae]
Length=505

 Score =  504 bits (1298),  Expect = 4e-179, Method: Compositional matrix adjust.
 Identities = 244/265 (92%), Positives = 255/265 (96%), Gaps = 0/265 (0%)

Query  1    ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT  60
            ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY DLIELTESLFRT
Sbjct  241  ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRT  300

Query  61   LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGI  120
            LAQ++LG T+VTYG+   DFGKPFEKLTMREAIKKYRPETDMADLDNFD+AKA+AESIGI
Sbjct  301  LAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGI  360

Query  121  HVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG  180
             VEKSWGLGRIVTEIF+EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG
Sbjct  361  TVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG  420

Query  181  REIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID  240
            REIGNGFSELNDAEDQA+RF +QV AK AGDDEAMFYDEDYVTALE+GLPPTAGLGIGID
Sbjct  421  REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGID  480

Query  241  RMVMLFTNSHTIRDVILFPAMRPVK  265
            RM+MLFTNSHTIRDVILFPAMRP K
Sbjct  481  RMIMLFTNSHTIRDVILFPAMRPQK  505


> WP_000004771.1 MULTISPECIES: elongation factor P--(R)-beta-lysine 
ligase [Proteobacteria]
Length=325

 Score =  114 bits (285),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 135/266 (51%), Gaps = 23/266 (9%)

Query  1    ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT  60
            E ++KRL+V G   VF++ R+FRNE +   HNPEFTM+E Y  + D   L+   + L + 
Sbjct  78   EYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ  137

Query  61   LAQDILGKTEVTYGDVTLDFGK--PF--EKLTMREAIKKYRPETDMADLDNFDSAKAIAE  116
            +  D      ++Y    L + +  P   +K  +RE   K        DL N    +   +
Sbjct  138  VL-DCPAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKL-------DLSNVADTEEDRD  189

Query  117  SIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEF  176
            ++ + +  ++G   +   I +E       +PTF+  +PA  + LA+ +  +  + +RFE 
Sbjct  190  TL-LQLLFTFG---VEPNIGKE-------KPTFVYHFPASQASLAQISTEDHRVAERFEV  238

Query  177  FIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLG  236
            +  G E+ NGF EL DA +Q QRF      + A        D++ + AL+ G+P  +G+ 
Sbjct  239  YYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVA  298

Query  237  IGIDRMVMLFTNSHTIRDVILFPAMR  262
            +G+DR+VML   + T+ +VI F   R
Sbjct  299  LGVDRLVMLALGAETLAEVIAFSVDR  324


> WP_000117881.1 MULTISPECIES: asparagine--tRNA ligase [Proteobacteria]
Length=466

 Score = 58.5 bits (140),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 109/256 (43%), Gaps = 26/256 (10%)

Query  11   GFERVFEINRNFRNEGISV-RHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKT  69
               +++     FR E  +  RH  EF M+E  +A+A+  D+  L E++ + + + +L   
Sbjct  222  ALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVL---  278

Query  70   EVTYGDVTLDFGKPFEKLTMREAIKKYRP--ETDMADLDNFDSAKAIAESIGIHVEKS--  125
                 +   D  K F +   ++A+ +     E D A +D  D A  I E+ G   E    
Sbjct  279  -----EERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTD-AVTILENCGRKFENPVY  332

Query  126  WGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGN  185
            WG+  + +E    +AE H   P  +  YP ++     R + + +     +       +  
Sbjct  333  WGVD-LSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDV------LAP  385

Query  186  GFSELNDAEDQAQRF--LDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMV  243
            G  E+     + +R   LD+   +   + E  ++   Y     +G  P +G G+G +R++
Sbjct  386  GIGEIIGGSQREERLDVLDERMLEMGLNKEDYWW---YRDLRRYGTVPHSGFGLGFERLI  442

Query  244  MLFTNSHTIRDVILFP  259
               T    +RDVI FP
Sbjct  443  AYVTGVQNVRDVIPFP  458


> WP_001258678.1 MULTISPECIES: aspartate--tRNA ligase [Enterobacteriaceae]
Length=590

 Score = 56.6 bits (135),  Expect = 4e-10, Method: Compositional matrix adjust.
 Identities = 39/147 (27%), Positives = 66/147 (45%), Gaps = 5/147 (3%)

Query  114  IAESIGIHVEKSWG-LGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITD  172
            + + +G+  E  W  L  I   +FE+  E  L         P +++    +      + +
Sbjct  413  VGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVAN  472

Query  173  RFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPT  232
             ++  I G E+G G   +++  D  Q     +   +    E   +    + AL++G PP 
Sbjct  473  AYDMVINGYEVGGGSVRIHNG-DMQQTVFGILGINEEEQREKFGF---LLDALKYGTPPH  528

Query  233  AGLGIGIDRMVMLFTNSHTIRDVILFP  259
            AGL  G+DR+ ML T +  IRDVI FP
Sbjct  529  AGLAFGLDRLTMLLTGTDNIRDVIAFP  555


 Score = 45.4 bits (106),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 33/115 (29%), Positives = 60/115 (52%), Gaps = 21/115 (18%)

Query  1    ELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRT  60
            +L+ + L++ GF+R ++I + FR+E +     PEFT +++  ++     + E+ E+L R 
Sbjct  195  QLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRH  254

Query  61   LAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKY---RPE-------TDMADL  105
            L  ++ G   V  GD        F  +T  EA ++Y   +P+       TD+ADL
Sbjct  255  LWLEVKG---VDLGD--------FPVMTFAEAERRYGSDKPDLRNPMELTDVADL  298


> WP_001301303.1 MULTISPECIES: IMPACT family member YigZ [Enterobacteriaceae]
Length=204

 Score = 27.7 bits (60),  Expect = 0.66, Method: Compositional matrix adjust.
 Identities = 15/36 (42%), Positives = 21/36 (58%), Gaps = 0/36 (0%)

Query  83   PFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESI  118
            P   +T+ E IKK R  T +A  D  ++AKA  ES+
Sbjct  7    PAAPVTVVEEIKKSRFITLLAHTDGVEAAKAFVESV  42


> WP_000832450.1 MULTISPECIES: TonB dependent receptor [Enterobacteriaceae]
Length=790

 Score = 25.4 bits (54),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 0/35 (0%)

Query  162  RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQ  196
            R+ D+NP+I   +    G   + NG+ E N  ++Q
Sbjct  617  RQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQ  651


> WP_000535976.1 MULTISPECIES: guanosine-5'-triphosphate,3'-diphosphate 
pyrophosphatase [Enterobacteriaceae]
Length=494

 Score = 25.4 bits (54),  Expect = 4.9, Method: Compositional matrix adjust.
 Identities = 21/97 (22%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query  71   VTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGR  130
            + YG + L   +     T+R   +++     M D+D       +A +    VEK W L  
Sbjct  295  LVYGMLHLTVEQDIRSRTLRNIQRRF-----MIDIDQAQRVAKVAANFFDQVEKEWHLEA  349

Query  131  IVTEIFEEVAEAHLIQPTF-ITEYPAEVSPLARRNDV  166
            I  ++     + H I  +    + P   + L R  D+
Sbjct  350  ISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDL  386


> WP_000069410.1 MULTISPECIES: phosphoenolpyruvate synthase [Enterobacteriaceae]
Length=792

 Score = 24.6 bits (52),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 11/38 (29%), Positives = 19/38 (50%), Gaps = 0/38 (0%)

Query  120  IHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEV  157
            + +  +WGLG +V +      E ++ +PT     PA V
Sbjct  219  VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIV  256


> WP_000280494.1 MULTISPECIES: bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 
3'-diphosphatase [Enterobacteriaceae]
Length=702

 Score = 24.6 bits (52),  Expect = 8.5, Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 0/34 (0%)

Query  55  ESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLT  88
           E+L   L  D++  T  TY D+   FGK   +L 
Sbjct  64  ETLMAALLHDVIEDTPATYQDMEQLFGKSVAELV  97



Lambda      K        H        a         alpha
   0.320    0.139    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 175015710


  Database: Mentha_longifoli.fa
    Posted date:  Jan 8, 2019  3:45 AM
  Number of letters in database: 1,311,348
  Number of sequences in database:  4,329



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40