BLAST Results




BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Glycyrrhiza_uralensis.fa
           12,528 sequences; 378,856,821 total letters



Query= 
Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Scaffold00001                                                        217    1e-55
  Scaffold00057                                                       48.2    1e-04
  Scaffold07269                                                       33.7    2.4  
  Scaffold03164                                                       33.7    2.4  
  Scaffold01296                                                       33.7    2.4  
  Scaffold00196                                                       33.7    2.4  
  Scaffold03055                                                       31.9    8.5  
  Scaffold00765                                                       31.9    8.5  
  Scaffold00495                                                       31.9    8.5  
  Scaffold00385                                                       31.9    8.5  
  Scaffold00124                                                       31.9    8.5  
  Scaffold00058                                                       31.9    8.5  


> Query1 on Scaffold00001
Length=1116388

 Score =  217 bits (240),  Expect = 1e-55
 Identities = 120/120 (100%), Gaps = 0/120 (0%)
 Strand=Plus/Plus

Query  1     TTGTGTCAAAATGTTCCTTGGCTGCCAGGTGCACAGAGTCAACTTGTTTGTTCTGGGTGT  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1261  TTGTGTCAAAATGTTCCTTGGCTGCCAGGTGCACAGAGTCAACTTGTTTGTTCTGGGTGT  1320

Query  61    AGAAACCTTCTAGTCTATCCGGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1321  AGAAACCTTCTAGTCTATCCGGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCA  1380


> Query1 on Scaffold00057
Length=467275

 Score = 48.2 bits (52),  Expect = 1e-04
 Identities = 90/129 (70%), Gaps = 20/129 (16%)
 Strand=Plus/Minus

Query  7       CAAAATGTTCCTTGGC--TGCCAGGTGCACAGAGTCA----ACTTGTTTGTTCTGGGTGT  60
               |||||| ||||| ||   || |||||||||||| |||    || ||| ||||||   | |
Sbjct  115613  CAAAAT-TTCCTCGGTGGTGGCAGGTGCACAGATTCAACGTACGTGTCTGTTCT-TATAT  115556

Query  61      AGAAACCTTCTAGTCTAT--------CCGGTTG----GAGCCACCTCTGTGTGCTGTGCT  108
               ||||| |||||  ||| |         | ||||     |||||||||||| ||| ||| |
Sbjct  115555  AGAAATCTTCTGCTCTTTAATTTTCCACAGTTGTAGCTAGCCACCTCTGTATGCAGTGTT  115496

Query  109     GTTTGCAAT  117
               |||||||||
Sbjct  115495  GTTTGCAAT  115487


> Query1 on Scaffold07269
Length=4467

 Score = 33.7 bits (36),  Expect = 2.4
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  47    TTTGTTCTGGGTGTAGAA  64
             ||||||||||||||||||
Sbjct  2966  TTTGTTCTGGGTGTAGAA  2983


> Query1 on Scaffold03164
Length=28611

 Score = 33.7 bits (36),  Expect = 2.4
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Plus

Query  98     TGTGCTGTGCTGTTTGCAATGCA  120
              ||||||||||||| |||| ||||
Sbjct  24027  TGTGCTGTGCTGTGTGCATTGCA  24049


> Query1 on Scaffold01296
Length=78567

 Score = 33.7 bits (36),  Expect = 2.4
 Identities = 23/26 (88%), Gaps = 0/26 (0%)
 Strand=Plus/Plus

Query  30     TGCACAGAGTCAACTTGTTTGTTCTG  55
              |||| ||||||||||||||  |||||
Sbjct  43297  TGCAAAGAGTCAACTTGTTGCTTCTG  43322


> Query1 on Scaffold00196
Length=261610

 Score = 33.7 bits (36),  Expect = 2.4
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  93      CTCTGTGTGCTGTGCTGT  110
               ||||||||||||||||||
Sbjct  197216  CTCTGTGTGCTGTGCTGT  197233


> Query1 on Scaffold03055
Length=30214

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 30/36 (83%), Gaps = 3/36 (8%)
 Strand=Plus/Plus

Query  31     GCACA-GAGTCAACTTGTTTGTTCTGGGTGTAGAAA  65
              ||||| ||||||  ||  ||||| ||||||||||||
Sbjct  26337  GCACATGAGTCATATT--TTGTTTTGGGTGTAGAAA  26370


> Query1 on Scaffold00765
Length=120249

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  99    GTGCTGTGCTGTTTGCAATGCA  120
             ||||||||||| |||||| |||
Sbjct  9261  GTGCTGTGCTGGTTGCAACGCA  9282


> Query1 on Scaffold00495
Length=155416

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 22/24 (92%), Gaps = 1/24 (4%)
 Strand=Plus/Minus

Query  45     TGTTTGTTCTGGGTGTAGA-AACC  67
              |||||||||||| |||||| ||||
Sbjct  89566  TGTTTGTTCTGGTTGTAGACAACC  89543


> Query1 on Scaffold00385
Length=177468

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1      TTGTGTCAAAATGTTCCTTGGC  22
              || |||||||||||||| ||||
Sbjct  76663  TTTTGTCAAAATGTTCCATGGC  76684


> Query1 on Scaffold00124
Length=333062

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 24/27 (89%), Gaps = 1/27 (4%)
 Strand=Plus/Minus

Query  95      CTGTGTGCTGTGCTGTTTGCA-ATGCA  120
               ||||||||||||||| ||| | |||||
Sbjct  248769  CTGTGTGCTGTGCTGGTTGGACATGCA  248743


> Query1 on Scaffold00058
Length=464492

 Score = 31.9 bits (34),  Expect = 8.5
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  11     ATGTTCCTTGGCTGCCAGGTGC  32
              |||||||||||||||  |||||
Sbjct  21171  ATGTTCCTTGGCTGCTTGGTGC  21192



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 35202226545


  Database: Glycyrrhiza_uralensis.fa
    Posted date:  Jan 8, 2019  2:46 PM
  Number of letters in database: 378,856,821
  Number of sequences in database:  12,528



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2