BLAST Results




BLASTP 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Mentha_longifoli.pep
           4,329 sequences; 1,311,348 total letters



Query= 
Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  WP_000002907.1 MULTISPECIES: diacylglycerol kinase [Proteobacte...   239    1e-82
  WP_000520804.1 MULTISPECIES: dihydrofolate reductase FolM [Prot...  26.6    0.50 
  WP_000964131.1 MULTISPECIES: phospho-N-acetylmuramoyl-pentapept...  26.6    0.57 
  WP_000460843.1 MULTISPECIES: PTS system EIIC permease component...  26.2    0.75 
  WP_000065950.1 MULTISPECIES: transporter [Proteobacteria]           23.9    4.1  
  WP_001298860.1 MULTISPECIES: phosphoethanolamine transferase Ep...  23.5    6.8  


> Query1 on WP_000002907.1 MULTISPECIES: diacylglycerol kinase [Proteobacteria]
Length=122

 Score =  239 bits (609),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%), Gaps = 0/122 (0%)

Query  1    MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLI  60
            MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLI
Sbjct  1    MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLI  60

Query  61   SSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSH  120
            SSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSH
Sbjct  61   SSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILLWSH  120

Query  121  FG  122
            FG
Sbjct  121  FG  122


> Query1 on WP_000520804.1 MULTISPECIES: dihydrofolate reductase FolM [Proteobacteria]
Length=240

 Score = 26.6 bits (57),  Expect = 0.50, Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 0/42 (0%)

Query  18   SWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLL  59
            S  GLRA   N +A+  E     LA V+AC + +   T  LL
Sbjct  75   STHGLRAILHNASAWMAEKPGAPLADVLACMMQIHVNTPYLL  116


> Query1 on WP_000964131.1 MULTISPECIES: phospho-N-acetylmuramoyl-pentapeptide-transferase 
[Proteobacteria]
Length=360

 Score = 26.6 bits (57),  Expect = 0.57, Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 21/48 (44%), Gaps = 0/48 (0%)

Query  67   MIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAVLIAIIVAVITWC  114
            MI  +   +   VV   G E H        MG   +L AI+++V+ W 
Sbjct  44   MIAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWA  91


> Query1 on WP_000460843.1 MULTISPECIES: PTS system EIIC permease component 
[Proteobacteria]
Length=437

 Score = 26.2 bits (56),  Expect = 0.75, Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 30/53 (57%), Gaps = 3/53 (6%)

Query  62   SVMLVMIVEILNSAIEAVVDRIGSEYHEL---SGRAKDMGSAAVLIAIIVAVI  111
             +++VM ++ L+  I+ +++R G   H     +G A  +G A  + A+I+ VI
Sbjct  47   GLVIVMAIDSLSPPIKVMIERFGLALHVFDVGAGPASGVGYATAIGAMIIPVI  99


> Query1 on WP_000065950.1 MULTISPECIES: transporter [Proteobacteria]
Length=409

 Score = 23.9 bits (50),  Expect = 4.1, Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 0/25 (0%)

Query  96   DMGSAAVLIAIIVAVITWCILLWSH  120
             +GSA  ++  I A++ W +  W H
Sbjct  31   QLGSAGAVVLFITALVAWPLTYWPH  55


> Query1 on WP_001298860.1 MULTISPECIES: phosphoethanolamine transferase 
EptA [Enterobacteriaceae]
Length=547

 Score = 23.5 bits (49),  Expect = 6.8, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (61%), Gaps = 0/23 (0%)

Query  36   GVAVLLAVVIACWLDVDAITRVL  58
            G + +LA +IACW+ +   T  L
Sbjct  129  GFSGVLAALIACWIKIKPATSRL  151



Lambda      K        H        a         alpha
   0.327    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 48771219


  Database: Mentha_longifoli.pep
    Posted date:  Jan 8, 2019  3:07 AM
  Number of letters in database: 1,311,348
  Number of sequences in database:  4,329



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40