BLAST Results
BLASTX 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodiola_rosea.pep 31,517 sequences; 10,932,259 total letters Query= test21 Length=707 Score E Sequences producing significant alignments: (Bits) Value CCG026599.2 locus=scaffold51:834:1541:- [translate_table: stan... 430 2e-153 CCG000136.1 locus=scaffold1021:6690:8197:- [translate_table: s... 42.7 9e-05 CCG014001.1 locus=scaffold139150:384175:386847:+ [translate_ta... 31.2 0.67 CCG028308.1 locus=scaffold64:192808:194062:- [translate_table:... 30.0 0.82 CCG007248.1 locus=scaffold138475:181618:183880:+ [translate_ta... 30.4 0.90 CCG004799.2 locus=scaffold137662:25182:25412:+ [translate_tabl... 26.9 3.4 CCG020260.1 locus=scaffold20872:490164:495345:+ [translate_tab... 28.5 4.2 CCG030345.1 locus=scaffold8140:338752:340977:- [translate_tabl... 28.1 5.6 CCG006895.1 locus=scaffold138458:284760:294057:+ [translate_ta... 27.3 9.5 CCG013651.1 locus=scaffold139130:109470:110354:- [translate_ta... 26.9 9.7 > test21 on CCG026599.2 locus=scaffold51:834:1541:- [translate_table: standard] Length=235 Score = 430 bits (1106), Expect = 2e-153, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%), Gaps = 0/207 (0%) Frame = +1 Query 85 KVFTRIRLATLSDVPVIHKLIHQMAVFEKLTHLFSATEDSLASTLFNSPPFQSFTVFILE 264 KVFTRIRLATLSDVPVIHKLIHQMAVFEKLTHLFSATEDSLASTLFNSPPFQSFTVFILE Sbjct 29 KVFTRIRLATLSDVPVIHKLIHQMAVFEKLTHLFSATEDSLASTLFNSPPFQSFTVFILE 88 Query 265 VSPHDFPIPTPNPSADVHFPPVVKPVELETPVTDLEQDEFRSAGRDWDVVVAGFVLFFPN 444 VSPHDFPIPTPNPSADVHFPPVVKPVELETPVTDLEQDEFRSAGRDWDVVVAGFVLFFPN Sbjct 89 VSPHDFPIPTPNPSADVHFPPVVKPVELETPVTDLEQDEFRSAGRDWDVVVAGFVLFFPN 148 Query 445 YSTFLSKPGFYIEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAIKF 624 YSTFLSKPGFYIEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAIKF Sbjct 149 YSTFLSKPGFYIEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAIKF 208 Query 625 YEEMGAQVLQEWRVCRLTGDALRAYGN 705 YEEMGAQVLQEWRVCRLTGDALRAYGN Sbjct 209 YEEMGAQVLQEWRVCRLTGDALRAYGN 235 > test21 on CCG000136.1 locus=scaffold1021:6690:8197:- [translate_table: standard] Length=285 Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/108 (30%), Positives = 49/108 (45%), Gaps = 15/108 (14%) Frame = +1 Query 373 QDEFRSAGRDWDV-----VVAGFVLFFPNYSTFLSKPG---------FYIEDLFVRECYR 510 D+F+ G D + VAG +L + FL + G YI ++ VRE YR Sbjct 147 SDDFKIGGLDGKISFNKGYVAG-ILTVDTIADFLPRKGPLRQRRSGVAYISNVAVREKYR 205 Query 511 RKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAIKFYEEMGAQVLQ 654 RKG K L++ +QA G + N AIK Y++ G + ++ Sbjct 206 RKGIAKKLVTKAEAQAKSWGCRAIALHCDLDNPGAIKLYKDQGFKCIK 253 > test21 on CCG014001.1 locus=scaffold139150:384175:386847:+ [translate_table: standard] Length=890 Score = 31.2 bits (69), Expect = 0.67, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (7%) Frame = +3 Query 129 SDPQAHPPDGR--VREANSPLLRHGR--LSGLHSLQLPSLPILHRLHSRSFAARFSYS 290 S P+ DGR +ANS LR L+ + + Q PS+P + + +R F + F+YS Sbjct 44 SAPETTDTDGRKWTTDANSKFLRASSTSLTSVAATQDPSVPEVPFMTARIFTSNFTYS 101 > test21 on CCG028308.1 locus=scaffold64:192808:194062:- [translate_table: standard] Length=164 Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/58 (33%), Positives = 27/58 (47%), Gaps = 0/58 (0%) Frame = +1 Query 475 YIEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVLDWNVNAIKFYEEMGAQV 648 YI L V YR G G LL+ V + K + V N +AI FY++ G ++ Sbjct 77 YIMTLGVLAPYRGLGIGSTLLNHVIDLSTKQNVSEIYLHVQTNNEDAINFYKKFGFEI 134 > test21 on CCG007248.1 locus=scaffold138475:181618:183880:+ [translate_table: standard] Length=490 Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 13/118 (11%) Frame = +1 Query 139 KLIHQMAVFEKLTHLFSATEDSLASTLFNSPPFQSFTVFILEVSPHDFPIPTPNPSADVH 318 LI Q+A K+ +F+ D++ + +F + PTP +H Sbjct 230 SLITQLAATGKVKKIFAHCLDNI----------RGGGIFAIGEIVEPLVKPTPLIPNKMH 279 Query 319 FPPVVKPVELETPVTDLEQDEFRSAGRDWDVVVAGFVL-FFPN--YSTFLSKPGFYIE 483 + +K +E+ L DEF G+ ++ +G L + P+ Y+ +++ G +I Sbjct 280 YNVALKSIEVGGNTLPLSLDEFSGQGQGGTIIDSGTALAYLPDEIYTPLVNQAGTFIS 337 > test21 on CCG004799.2 locus=scaffold137662:25182:25412:+ [translate_table: standard] Length=76 Score = 26.9 bits (58), Expect = 3.4, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (9%) Frame = +1 Query 214 TLFNSPPFQSFTVFILEVSPHDFPIP----TPNPSADVHFPPVVK 336 +L + PFQS V P P P P + HFPP+ K Sbjct 30 SLHDQTPFQSHQVLPWSSQPSHTRSPQLILAPPPPSSTHFPPLQK 74 > test21 on CCG020260.1 locus=scaffold20872:490164:495345:+ [translate_table: standard] Length=662 Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 0/58 (0%) Frame = +1 Query 424 FVLFFPNYSTFLSKPGFYIEDLFVRECYRRKGFGKMLLSAVASQAVKMGYGRVEWVVL 597 F +FFP + L PG +E F R C K + + +++ ++ + GR WV L Sbjct 605 FPIFFPLRTPMLIPPGSRLEVHFWRCCSPSKVWYEWCVASPSASPIHNSNGRSYWVGL 662 > test21 on CCG030345.1 locus=scaffold8140:338752:340977:- [translate_table: standard] Length=741 Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats. Identities = 13/47 (28%), Positives = 21/47 (45%), Gaps = 3/47 (6%) Frame = -3 Query 606 IPVQHNPLYPPVSHFhrlrrhrrqqhLPKPLPPVTLPHKQILNIKPW 466 +P P YPP+S+ + P P P + H+ ++N PW Sbjct 670 MPQSAQPGYPPLSY---SYQQYYSAVPPLPTPTSVMDHQPVMNNPPW 713 > test21 on CCG006895.1 locus=scaffold138458:284760:294057:+ [translate_table: standard] Length=1147 Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats. Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 0/24 (0%) Frame = -3 Query 153 LVDELVDHWDVRERSEADASEHLG 82 L+ + DH+DV ERSE++ H G Sbjct 103 LIAMVTDHYDVMERSESEQGSHEG 126 > test21 on CCG013651.1 locus=scaffold139130:109470:110354:- [translate_table: standard] Length=294 Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust. Identities = 15/49 (31%), Positives = 23/49 (47%), Gaps = 0/49 (0%) Frame = +3 Query 123 RPSDPQAHPPDGRVREANSPLLRHGRLSGLHSLQLPSLPILHRLHSRSF 269 +P+ A PP A L GR+ +L+ P LP+ H +H+ F Sbjct 33 KPAQALARPPISNFHVAAVGLGSSGRIFIGVNLEFPGLPLHHSVHAEQF 81 Lambda K H a alpha 0.318 0.134 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1111340160 Database: Rhodiola_rosea.pep Posted date: Jan 8, 2019 4:46 PM Number of letters in database: 10,932,259 Number of sequences in database: 31,517 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 12 Window for multiple hits: 40