BLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Rhodiola_rosea.cds
           31,517 sequences; 32,891,328 total letters



Query= test21

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  CCG026599.2  locus=scaffold51:834:1541:-                            1276    0.0  
  CCG026075.1  locus=scaffold4612:274876:275142:-                     60.8    1e-08
  CCG000585.1  locus=scaffold10784:24566:25066:-                      37.4    0.12 
  CCG023169.1  locus=scaffold3009:238341:238826:-                     37.4    0.12 
  CCG019872.1  locus=scaffold19813:33049:33624:+                      35.6    0.43 
  CCG013524.1  locus=scaffold139124:285449:286372:-                   33.7    1.5  
  CCG014891.1  locus=scaffold139209:162223:165397:+                   33.7    1.5  
  CCG005431.1  locus=scaffold138275:95634:97962:+                     33.7    1.5  
  CCG023424.1  locus=scaffold30717:74267:78597:-                      33.7    1.5  
  CCG029176.1  locus=scaffold6908:483908:487231:-                     33.7    1.5  
  CCG029423.1  locus=scaffold7235:40364:41629:+                       33.7    1.5  
  CCG020780.1  locus=scaffold219:414970:417607:+                      33.7    1.5  
  CCG014499.1  locus=scaffold139170:587366:590265:-                   31.9    5.3  
  CCG013526.1  locus=scaffold139124:293282:295458:-                   31.9    5.3  
  CCG016576.1  locus=scaffold139462:103299:109650:+                   31.9    5.3  
  CCG016231.1  locus=scaffold139424:134413:137477:+                   31.9    5.3  
  CCG012987.1  locus=scaffold139080:13533:15777:+                     31.9    5.3  
  CCG010677.1  locus=scaffold138783:73799:76699:-                     31.9    5.3  
  CCG009264.1  locus=scaffold138628:148454:148810:-                   31.9    5.3  
  CCG005484.1  locus=scaffold138281:246627:247307:-                   31.9    5.3  
  CCG005469.1  locus=scaffold138281:111476:112246:+                   31.9    5.3  
  CCG006136.1  locus=scaffold138412:10933:11358:-                     31.9    5.3  
  CCG004960.1  locus=scaffold137982:168085:169341:-                   31.9    5.3  
  CCG004776.1  locus=scaffold137635:332522:336262:-                   31.9    5.3  
  CCG004255.1  locus=scaffold136756:144408:144908:-                   31.9    5.3  
  CCG004622.1  locus=scaffold137502:24168:24476:-                     31.9    5.3  
  CCG004321.1  locus=scaffold136918:76995:78443:+                     31.9    5.3  
  CCG002289.1  locus=scaffold130172:10606:13686:-                     31.9    5.3  
  CCG026858.1  locus=scaffold53487:85457:89434:-                      31.9    5.3  
  CCG008461.1  locus=scaffold13855:214374:223246:+                    31.9    5.3  
  CCG000632.1  locus=scaffold10887:31615:36480:+                      31.9    5.3  
  CCG029987.3  locus=scaffold7929:110407:111540:-                     31.9    5.3  
  CCG030344.1  locus=scaffold8140:325905:329146:+                     31.9    5.3  
  CCG025417.1  locus=scaffold4128:219706:221664:-                     31.9    5.3  
  CCG025415.1  locus=scaffold4128:208350:210307:-                     31.9    5.3  


> CCG026599.2  locus=scaffold51:834:1541:-
Length=708

 Score = 1276 bits (1414),  Expect = 0.0
 Identities = 707/707 (100%), Gaps = 0/707 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGCCGCAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCATCGCCGATCAACATT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTGCCGCAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCATCGCCGATCAACATT  60

Query  61   ATCTCCTCCGGCCAGCCGAGTCCCAAGGTGTTCACTCGCATCCGCCTCGCTACGCTCTCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCTCCTCCGGCCAGCCGAGTCCCAAGGTGTTCACTCGCATCCGCCTCGCTACGCTCTCG  120

Query  121  GACGTCCCAGTGATCCACAAGCTCATCCACCAGATGGCCGTGTTCGAGAAGCTAACTCAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GACGTCCCAGTGATCCACAAGCTCATCCACCAGATGGCCGTGTTCGAGAAGCTAACTCAC  180

Query  181  CTCTTCTCCGCCACGGAAGACTCTCTGGCCTCCACTCTCTTCAACTCCCCTCCCTTCCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTCTTCTCCGCCACGGAAGACTCTCTGGCCTCCACTCTCTTCAACTCCCCTCCCTTCCAA  240

Query  241  TCCTTCACCGTCTTCATTCTCGAAGTTTCGCCGCACGATTTTCCTATTCCGACACCGAAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCCTTCACCGTCTTCATTCTCGAAGTTTCGCCGCACGATTTTCCTATTCCGACACCGAAT  300

Query  301  CCAAGCGCGGACGTCCACTTCCCGCCCGTGGTGAAGCCGGTGGAGCTGGAGACGCCGGTT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCAAGCGCGGACGTCCACTTCCCGCCCGTGGTGAAGCCGGTGGAGCTGGAGACGCCGGTT  360

Query  361  ACGGATTTAGAGCAGGATGAGTTCAGATCGGCGGGGAGGGATTGGGACGTGGTGGTGGCT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ACGGATTTAGAGCAGGATGAGTTCAGATCGGCGGGGAGGGATTGGGACGTGGTGGTGGCT  420

Query  421  GGATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGAGTAAGCCAGGGTTTTATATT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GGATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGAGTAAGCCAGGGTTTTATATT  480

Query  481  GAGGATCTGTTTGTGAGGGAGTGTTACAGGAGGAAGGGGTTTGGGAAGATGCTGCTGTCT  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GAGGATCTGTTTGTGAGGGAGTGTTACAGGAGGAAGGGGTTTGGGAAGATGCTGCTGTCT  540

Query  541  GCGGTGGCGTCGCAGGCGGTGAAAATGGGATACGGGAGGGTAGAGTGGGTTGTGCTGGAC  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCGGTGGCGTCGCAGGCGGTGAAAATGGGATACGGGAGGGTAGAGTGGGTTGTGCTGGAC  600

Query  601  TGGAATGTGAATGCGATTAAGTTTTATGAGGAGATGGGTGCACAGGTGCTCCAGGAGTGG  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  TGGAATGTGAATGCGATTAAGTTTTATGAGGAGATGGGTGCACAGGTGCTCCAGGAGTGG  660

Query  661  AGAGTTTGCAGGCTCACGGGTGATGCGCTTCGTGCTTATGGTAATTA  707
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AGAGTTTGCAGGCTCACGGGTGATGCGCTTCGTGCTTATGGTAATTA  707


> CCG026075.1  locus=scaffold4612:274876:275142:-
Length=267

 Score = 60.8 bits (66),  Expect = 1e-08
 Identities = 49/57 (86%), Gaps = 3/57 (5%)
 Strand=Plus/Plus

Query  406  GACGTGGTGGTGGCTGG--ATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGA  460
            |||| |||||| ||||   |||||||||||||||||||| | ||||||| |||||||
Sbjct  205  GACGCGGTGGTTGCTGTGAATTTGTTCTCTTCTTTCCGATCCACTCGAC-TTTCTGA  260


> CCG000585.1  locus=scaffold10784:24566:25066:-
Length=501

 Score = 37.4 bits (40),  Expect = 0.12
 Identities = 29/35 (83%), Gaps = 0/35 (0%)
 Strand=Plus/Minus

Query  11   CAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCA  45
            || ||||||||||||| ||  | ||| ||||||||
Sbjct  193  CACCGCCTCCTCCAAACCCTCCTCCACCTCCACCA  159


> CCG023169.1  locus=scaffold3009:238341:238826:-
Length=486

 Score = 37.4 bits (40),  Expect = 0.12
 Identities = 29/35 (83%), Gaps = 0/35 (0%)
 Strand=Plus/Minus

Query  11   CAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCA  45
            || ||||||||||||| ||  | ||| ||||||||
Sbjct  178  CACCGCCTCCTCCAAACCCTCCTCCACCTCCACCA  144


> CCG019872.1  locus=scaffold19813:33049:33624:+
Length=576

 Score = 35.6 bits (38),  Expect = 0.43
 Identities = 19/19 (100%), Gaps = 0/19 (0%)
 Strand=Plus/Minus

Query  11   CAGCGCCTCCTCCAAATCC  29
            |||||||||||||||||||
Sbjct  381  CAGCGCCTCCTCCAAATCC  363


> CCG013524.1  locus=scaffold139124:285449:286372:-
Length=924

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 21/23 (91%), Gaps = 0/23 (0%)
 Strand=Plus/Minus

Query  542  CGGTGGCGTCGCAGGCGGTGAAA  564
            ||||||||||| || ||||||||
Sbjct  136  CGGTGGCGTCGTAGTCGGTGAAA  114


> CCG014891.1  locus=scaffold139209:162223:165397:+
Length=1794

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  416  TGGCTGGATTTGTTCTCT  433
            ||||||||||||||||||
Sbjct  2    TGGCTGGATTTGTTCTCT  19


> CCG005431.1  locus=scaffold138275:95634:97962:+
Length=2109

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Minus

Query  221   TCAACTCCCCTCCCTTCC  238
             ||||||||||||||||||
Sbjct  1940  TCAACTCCCCTCCCTTCC  1923


> CCG023424.1  locus=scaffold30717:74267:78597:-
Length=4239

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 27/32 (84%), Gaps = 3/32 (9%)
 Strand=Plus/Minus

Query  212  CCACTCTCTTCAAC---TCCCCTCCCTTCCAA  240
            |||||||| |||||   ||||||||| |||||
Sbjct  218  CCACTCTCATCAACAACTCCCCTCCCATCCAA  187


> CCG029176.1  locus=scaffold6908:483908:487231:-
Length=1521

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 26/30 (87%), Gaps = 1/30 (3%)
 Strand=Plus/Minus

Query  209  CCTCCACTCTCTTCAACTCCCCTCCCTTCC  238
            ||||||||||| ||| || ||||||| |||
Sbjct  466  CCTCCACTCTCATCATCT-CCCTCCCCTCC  438


> CCG029423.1  locus=scaffold7235:40364:41629:+
Length=1266

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 26/30 (87%), Gaps = 1/30 (3%)
 Strand=Plus/Minus

Query  23    CAAATCCGTCGCCAACTCCACCATCGCCGA  52
             ||| ||| || |||||| ||||||||||||
Sbjct  1169  CAATTCCCTC-CCAACTTCACCATCGCCGA  1141


> CCG020780.1  locus=scaffold219:414970:417607:+
Length=2049

 Score = 33.7 bits (36),  Expect = 1.5
 Identities = 30/37 (81%), Gaps = 2/37 (5%)
 Strand=Plus/Minus

Query  236  TCCAATCCTTCACCGTCTT--CATTCTCGAAGTTTCG  270
            ||||| | |||||  |||   ||||||||||||||||
Sbjct  502  TCCAAGCATTCACACTCTCAGCATTCTCGAAGTTTCG  466


> CCG014499.1  locus=scaffold139170:587366:590265:-
Length=1590

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  235  TTCCAATCCTTCACCGTCTTCA  256
            |||||  |||||||||||||||
Sbjct  294  TTCCAGACCTTCACCGTCTTCA  315


> CCG013526.1  locus=scaffold139124:293282:295458:-
Length=954

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 23/27 (85%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  232  CCCTTCCAATCCTTCACCGTCTTCATT  258
            || ||||||||||||||  ||| ||||
Sbjct  65   CCATTCCAATCCTTCACTATCTCCATT  39


> CCG016576.1  locus=scaffold139462:103299:109650:+
Length=2274

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  679   GGTGATGCGCTTCGTGC  695
             |||||||||||||||||
Sbjct  1481  GGTGATGCGCTTCGTGC  1465


> CCG016231.1  locus=scaffold139424:134413:137477:+
Length=1650

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  53   TCAACATTATCTCCTCC  69
            |||||||||||||||||
Sbjct  233  TCAACATTATCTCCTCC  217


> CCG012987.1  locus=scaffold139080:13533:15777:+
Length=906

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 23/27 (85%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  24   AAATCCGTCGCCAACTCCACCATCGCC  50
            |||||| |  ||||||||||||| |||
Sbjct  207  AAATCCTTGTCCAACTCCACCATGGCC  181


> CCG010677.1  locus=scaffold138783:73799:76699:-
Length=2118

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 26/32 (81%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  14   CGCCTCCTCCAAATCCGTCGCCAACTCCACCA  45
            ||||||||||| |  | || ||| ||||||||
Sbjct  359  CGCCTCCTCCAGACTCATCTCCACCTCCACCA  390


> CCG009264.1  locus=scaffold138628:148454:148810:-
Length=357

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 22/25 (88%), Gaps = 0/25 (0%)
 Strand=Plus/Plus

Query  414  GGTGGCTGGATTTGTTCTCTTCTTT  438
            ||||||||||||||  ||||| |||
Sbjct  330  GGTGGCTGGATTTGGGCTCTTGTTT  354


> CCG005484.1  locus=scaffold138281:246627:247307:-
Length=681

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 25/30 (83%), Gaps = 0/30 (0%)
 Strand=Plus/Minus

Query  16   CCTCCTCCAAATCCGTCGCCAACTCCACCA  45
            ||||||||||||||  | ||| | ||||||
Sbjct  362  CCTCCTCCAAATCCACCACCAGCCCCACCA  333


> CCG005469.1  locus=scaffold138281:111476:112246:+
Length=480

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  34   CCAACTCCACCATCGCC  50
            |||||||||||||||||
Sbjct  152  CCAACTCCACCATCGCC  136


> CCG006136.1  locus=scaffold138412:10933:11358:-
Length=426

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 23/27 (85%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  18   TCCTCCAAATCCGTCGCCAACTCCACC  44
            ||| |||| |||| | |||||||||||
Sbjct  345  TCCACCAAGTCCGCCACCAACTCCACC  319


> CCG004960.1  locus=scaffold137982:168085:169341:-
Length=1257

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 20/22 (91%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  328  GTGGTGAAGCCGGTGGAGCTGG  349
            |||||| ||| |||||||||||
Sbjct  497  GTGGTGGAGCTGGTGGAGCTGG  518


 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 25/30 (83%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  330   GGTGAAGCCGGTGGAGCTGGAGACGCCGGT  359
             ||||  | |||||||||||||| ||| |||
Sbjct  973   GGTGTTGGCGGTGGAGCTGGAGGCGCTGGT  1002


> CCG004776.1  locus=scaffold137635:332522:336262:-
Length=1908

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 23/26 (88%), Gaps = 2/26 (8%)
 Strand=Plus/Minus

Query  101  TCCGC--CTCGCTACGCTCTCGGACG  124
            |||||  ||| |||||||||||||||
Sbjct  132  TCCGCAACTCCCTACGCTCTCGGACG  107


> CCG004255.1  locus=scaffold136756:144408:144908:-
Length=501

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 26/31 (84%), Gaps = 2/31 (6%)
 Strand=Plus/Plus

Query  608  TGAATGCGATTAAG--TTTTATGAGGAGATG  636
            |||||| |||||||  ||||||| |||| ||
Sbjct  104  TGAATGAGATTAAGTTTTTTATGTGGAGGTG  134


> CCG004622.1  locus=scaffold137502:24168:24476:-
Length=309

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 19/20 (95%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  657  GTGGAGAGTTTGCAGGCTCA  676
            ||||| ||||||||||||||
Sbjct  212  GTGGAAAGTTTGCAGGCTCA  231


> CCG004321.1  locus=scaffold136918:76995:78443:+
Length=1449

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 29/37 (78%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  219  CTTCAACTCCCCTCCCTTCCAATCCTTCACCGTCTTC  255
            |||||||||||  | |  ||| ||| || ||||||||
Sbjct  252  CTTCAACTCCCTCCACCCCCACTCCCTCTCCGTCTTC  288


> CCG002289.1  locus=scaffold130172:10606:13686:-
Length=1359

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  475   TATATTGAGGATCTGTT  491
             |||||||||||||||||
Sbjct  1063  TATATTGAGGATCTGTT  1079


> CCG026858.1  locus=scaffold53487:85457:89434:-
Length=1884

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 25/29 (86%), Gaps = 1/29 (3%)
 Strand=Plus/Minus

Query  371  AGCA-GGATGAGTTCAGATCGGCGGGGAG  398
            |||| ||| | |||| |||||||||||||
Sbjct  68   AGCATGGAGGTGTTCGGATCGGCGGGGAG  40


> CCG008461.1  locus=scaffold13855:214374:223246:+
Length=4686

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Plus

Query  19    CCTCCAAATCCGTCGCC  35
             |||||||||||||||||
Sbjct  2024  CCTCCAAATCCGTCGCC  2040


> CCG000632.1  locus=scaffold10887:31615:36480:+
Length=2526

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  140  AGCTCATCCACCAGATG  156
            |||||||||||||||||
Sbjct  155  AGCTCATCCACCAGATG  139


> CCG029987.3  locus=scaffold7929:110407:111540:-
Length=1134

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 23/27 (85%), Gaps = 0/27 (0%)
 Strand=Plus/Minus

Query  509  GGAGGAAGGGGTTTGGGAAGATGCTGC  535
            || ||| | ||||||||||||||| ||
Sbjct  263  GGGGGATGTGGTTTGGGAAGATGCGGC  237


> CCG030344.1  locus=scaffold8140:325905:329146:+
Length=2223

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  412   GTGGTGGCTGGATTTGT  428
             |||||||||||||||||
Sbjct  2063  GTGGTGGCTGGATTTGT  2047


> CCG025417.1  locus=scaffold4128:219706:221664:-
Length=1470

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 24/27 (89%), Gaps = 1/27 (4%)
 Strand=Plus/Plus

Query  212  CCACTCTCTTCAACTCCCCTCCCTTCC  238
            ||||||||||| |||| ||| ||||||
Sbjct  126  CCACTCTCTTCTACTCACCT-CCTTCC  151


> CCG025415.1  locus=scaffold4128:208350:210307:-
Length=1470

 Score = 31.9 bits (34),  Expect = 5.3
 Identities = 24/27 (89%), Gaps = 1/27 (4%)
 Strand=Plus/Plus

Query  212  CCACTCTCTTCAACTCCCCTCCCTTCC  238
            ||||||||||| |||| ||| ||||||
Sbjct  126  CCACTCTCTTCTACTCACCT-CCTTCC  151



Lambda      K        H
   0.634    0.408    0.912 

Gapped
Lambda      K        H
   0.625    0.410    0.780 

Effective search space used: 21787450920


  Database: Rhodiola_rosea.cds
    Posted date:  Jan 8, 2019  4:45 PM
  Number of letters in database: 32,891,328
  Number of sequences in database:  31,517



Matrix: blastn matrix 2 -3
Gap Penalties: Existence: 5, Extension: 2