BLAST Results
BLASTN 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodiola_rosea.cds 31,517 sequences; 32,891,328 total letters Query= test21 Length=707 Score E Sequences producing significant alignments: (Bits) Value CCG026599.2 locus=scaffold51:834:1541:- 1276 0.0 CCG026075.1 locus=scaffold4612:274876:275142:- 60.8 1e-08 CCG000585.1 locus=scaffold10784:24566:25066:- 37.4 0.12 CCG023169.1 locus=scaffold3009:238341:238826:- 37.4 0.12 CCG019872.1 locus=scaffold19813:33049:33624:+ 35.6 0.43 CCG013524.1 locus=scaffold139124:285449:286372:- 33.7 1.5 CCG014891.1 locus=scaffold139209:162223:165397:+ 33.7 1.5 CCG005431.1 locus=scaffold138275:95634:97962:+ 33.7 1.5 CCG023424.1 locus=scaffold30717:74267:78597:- 33.7 1.5 CCG029176.1 locus=scaffold6908:483908:487231:- 33.7 1.5 CCG029423.1 locus=scaffold7235:40364:41629:+ 33.7 1.5 CCG020780.1 locus=scaffold219:414970:417607:+ 33.7 1.5 CCG014499.1 locus=scaffold139170:587366:590265:- 31.9 5.3 CCG013526.1 locus=scaffold139124:293282:295458:- 31.9 5.3 CCG016576.1 locus=scaffold139462:103299:109650:+ 31.9 5.3 CCG016231.1 locus=scaffold139424:134413:137477:+ 31.9 5.3 CCG012987.1 locus=scaffold139080:13533:15777:+ 31.9 5.3 CCG010677.1 locus=scaffold138783:73799:76699:- 31.9 5.3 CCG009264.1 locus=scaffold138628:148454:148810:- 31.9 5.3 CCG005484.1 locus=scaffold138281:246627:247307:- 31.9 5.3 CCG005469.1 locus=scaffold138281:111476:112246:+ 31.9 5.3 CCG006136.1 locus=scaffold138412:10933:11358:- 31.9 5.3 CCG004960.1 locus=scaffold137982:168085:169341:- 31.9 5.3 CCG004776.1 locus=scaffold137635:332522:336262:- 31.9 5.3 CCG004255.1 locus=scaffold136756:144408:144908:- 31.9 5.3 CCG004622.1 locus=scaffold137502:24168:24476:- 31.9 5.3 CCG004321.1 locus=scaffold136918:76995:78443:+ 31.9 5.3 CCG002289.1 locus=scaffold130172:10606:13686:- 31.9 5.3 CCG026858.1 locus=scaffold53487:85457:89434:- 31.9 5.3 CCG008461.1 locus=scaffold13855:214374:223246:+ 31.9 5.3 CCG000632.1 locus=scaffold10887:31615:36480:+ 31.9 5.3 CCG029987.3 locus=scaffold7929:110407:111540:- 31.9 5.3 CCG030344.1 locus=scaffold8140:325905:329146:+ 31.9 5.3 CCG025417.1 locus=scaffold4128:219706:221664:- 31.9 5.3 CCG025415.1 locus=scaffold4128:208350:210307:- 31.9 5.3 > test21 on CCG026599.2 locus=scaffold51:834:1541:- Length=708 Score = 1276 bits (1414), Expect = 0.0 Identities = 707/707 (100%), Gaps = 0/707 (0%) Strand=Plus/Plus Query 1 ATGGCTGCCGCAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCATCGCCGATCAACATT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTGCCGCAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCATCGCCGATCAACATT 60 Query 61 ATCTCCTCCGGCCAGCCGAGTCCCAAGGTGTTCACTCGCATCCGCCTCGCTACGCTCTCG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCTCCTCCGGCCAGCCGAGTCCCAAGGTGTTCACTCGCATCCGCCTCGCTACGCTCTCG 120 Query 121 GACGTCCCAGTGATCCACAAGCTCATCCACCAGATGGCCGTGTTCGAGAAGCTAACTCAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GACGTCCCAGTGATCCACAAGCTCATCCACCAGATGGCCGTGTTCGAGAAGCTAACTCAC 180 Query 181 CTCTTCTCCGCCACGGAAGACTCTCTGGCCTCCACTCTCTTCAACTCCCCTCCCTTCCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTCTTCTCCGCCACGGAAGACTCTCTGGCCTCCACTCTCTTCAACTCCCCTCCCTTCCAA 240 Query 241 TCCTTCACCGTCTTCATTCTCGAAGTTTCGCCGCACGATTTTCCTATTCCGACACCGAAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCTTCACCGTCTTCATTCTCGAAGTTTCGCCGCACGATTTTCCTATTCCGACACCGAAT 300 Query 301 CCAAGCGCGGACGTCCACTTCCCGCCCGTGGTGAAGCCGGTGGAGCTGGAGACGCCGGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCAAGCGCGGACGTCCACTTCCCGCCCGTGGTGAAGCCGGTGGAGCTGGAGACGCCGGTT 360 Query 361 ACGGATTTAGAGCAGGATGAGTTCAGATCGGCGGGGAGGGATTGGGACGTGGTGGTGGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACGGATTTAGAGCAGGATGAGTTCAGATCGGCGGGGAGGGATTGGGACGTGGTGGTGGCT 420 Query 421 GGATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGAGTAAGCCAGGGTTTTATATT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGAGTAAGCCAGGGTTTTATATT 480 Query 481 GAGGATCTGTTTGTGAGGGAGTGTTACAGGAGGAAGGGGTTTGGGAAGATGCTGCTGTCT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAGGATCTGTTTGTGAGGGAGTGTTACAGGAGGAAGGGGTTTGGGAAGATGCTGCTGTCT 540 Query 541 GCGGTGGCGTCGCAGGCGGTGAAAATGGGATACGGGAGGGTAGAGTGGGTTGTGCTGGAC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCGGTGGCGTCGCAGGCGGTGAAAATGGGATACGGGAGGGTAGAGTGGGTTGTGCTGGAC 600 Query 601 TGGAATGTGAATGCGATTAAGTTTTATGAGGAGATGGGTGCACAGGTGCTCCAGGAGTGG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGGAATGTGAATGCGATTAAGTTTTATGAGGAGATGGGTGCACAGGTGCTCCAGGAGTGG 660 Query 661 AGAGTTTGCAGGCTCACGGGTGATGCGCTTCGTGCTTATGGTAATTA 707 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AGAGTTTGCAGGCTCACGGGTGATGCGCTTCGTGCTTATGGTAATTA 707 > test21 on CCG026075.1 locus=scaffold4612:274876:275142:- Length=267 Score = 60.8 bits (66), Expect = 1e-08 Identities = 49/57 (86%), Gaps = 3/57 (5%) Strand=Plus/Plus Query 406 GACGTGGTGGTGGCTGG--ATTTGTTCTCTTCTTTCCGAACTACTCGACGTTTCTGA 460 |||| |||||| |||| |||||||||||||||||||| | ||||||| ||||||| Sbjct 205 GACGCGGTGGTTGCTGTGAATTTGTTCTCTTCTTTCCGATCCACTCGAC-TTTCTGA 260 > test21 on CCG000585.1 locus=scaffold10784:24566:25066:- Length=501 Score = 37.4 bits (40), Expect = 0.12 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 11 CAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCA 45 || ||||||||||||| || | ||| |||||||| Sbjct 193 CACCGCCTCCTCCAAACCCTCCTCCACCTCCACCA 159 > test21 on CCG023169.1 locus=scaffold3009:238341:238826:- Length=486 Score = 37.4 bits (40), Expect = 0.12 Identities = 29/35 (83%), Gaps = 0/35 (0%) Strand=Plus/Minus Query 11 CAGCGCCTCCTCCAAATCCGTCGCCAACTCCACCA 45 || ||||||||||||| || | ||| |||||||| Sbjct 178 CACCGCCTCCTCCAAACCCTCCTCCACCTCCACCA 144 > test21 on CCG019872.1 locus=scaffold19813:33049:33624:+ Length=576 Score = 35.6 bits (38), Expect = 0.43 Identities = 19/19 (100%), Gaps = 0/19 (0%) Strand=Plus/Minus Query 11 CAGCGCCTCCTCCAAATCC 29 ||||||||||||||||||| Sbjct 381 CAGCGCCTCCTCCAAATCC 363 > test21 on CCG013524.1 locus=scaffold139124:285449:286372:- Length=924 Score = 33.7 bits (36), Expect = 1.5 Identities = 21/23 (91%), Gaps = 0/23 (0%) Strand=Plus/Minus Query 542 CGGTGGCGTCGCAGGCGGTGAAA 564 ||||||||||| || |||||||| Sbjct 136 CGGTGGCGTCGTAGTCGGTGAAA 114 > test21 on CCG014891.1 locus=scaffold139209:162223:165397:+ Length=1794 Score = 33.7 bits (36), Expect = 1.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 416 TGGCTGGATTTGTTCTCT 433 |||||||||||||||||| Sbjct 2 TGGCTGGATTTGTTCTCT 19 > test21 on CCG005431.1 locus=scaffold138275:95634:97962:+ Length=2109 Score = 33.7 bits (36), Expect = 1.5 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Minus Query 221 TCAACTCCCCTCCCTTCC 238 |||||||||||||||||| Sbjct 1940 TCAACTCCCCTCCCTTCC 1923 > test21 on CCG023424.1 locus=scaffold30717:74267:78597:- Length=4239 Score = 33.7 bits (36), Expect = 1.5 Identities = 27/32 (84%), Gaps = 3/32 (9%) Strand=Plus/Minus Query 212 CCACTCTCTTCAAC---TCCCCTCCCTTCCAA 240 |||||||| ||||| ||||||||| ||||| Sbjct 218 CCACTCTCATCAACAACTCCCCTCCCATCCAA 187 > test21 on CCG029176.1 locus=scaffold6908:483908:487231:- Length=1521 Score = 33.7 bits (36), Expect = 1.5 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 209 CCTCCACTCTCTTCAACTCCCCTCCCTTCC 238 ||||||||||| ||| || ||||||| ||| Sbjct 466 CCTCCACTCTCATCATCT-CCCTCCCCTCC 438 > test21 on CCG029423.1 locus=scaffold7235:40364:41629:+ Length=1266 Score = 33.7 bits (36), Expect = 1.5 Identities = 26/30 (87%), Gaps = 1/30 (3%) Strand=Plus/Minus Query 23 CAAATCCGTCGCCAACTCCACCATCGCCGA 52 ||| ||| || |||||| |||||||||||| Sbjct 1169 CAATTCCCTC-CCAACTTCACCATCGCCGA 1141 > test21 on CCG020780.1 locus=scaffold219:414970:417607:+ Length=2049 Score = 33.7 bits (36), Expect = 1.5 Identities = 30/37 (81%), Gaps = 2/37 (5%) Strand=Plus/Minus Query 236 TCCAATCCTTCACCGTCTT--CATTCTCGAAGTTTCG 270 ||||| | ||||| ||| |||||||||||||||| Sbjct 502 TCCAAGCATTCACACTCTCAGCATTCTCGAAGTTTCG 466 > test21 on CCG014499.1 locus=scaffold139170:587366:590265:- Length=1590 Score = 31.9 bits (34), Expect = 5.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 235 TTCCAATCCTTCACCGTCTTCA 256 ||||| ||||||||||||||| Sbjct 294 TTCCAGACCTTCACCGTCTTCA 315 > test21 on CCG013526.1 locus=scaffold139124:293282:295458:- Length=954 Score = 31.9 bits (34), Expect = 5.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 232 CCCTTCCAATCCTTCACCGTCTTCATT 258 || |||||||||||||| ||| |||| Sbjct 65 CCATTCCAATCCTTCACTATCTCCATT 39 > test21 on CCG016576.1 locus=scaffold139462:103299:109650:+ Length=2274 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 679 GGTGATGCGCTTCGTGC 695 ||||||||||||||||| Sbjct 1481 GGTGATGCGCTTCGTGC 1465 > test21 on CCG016231.1 locus=scaffold139424:134413:137477:+ Length=1650 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 53 TCAACATTATCTCCTCC 69 ||||||||||||||||| Sbjct 233 TCAACATTATCTCCTCC 217 > test21 on CCG012987.1 locus=scaffold139080:13533:15777:+ Length=906 Score = 31.9 bits (34), Expect = 5.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 24 AAATCCGTCGCCAACTCCACCATCGCC 50 |||||| | ||||||||||||| ||| Sbjct 207 AAATCCTTGTCCAACTCCACCATGGCC 181 > test21 on CCG010677.1 locus=scaffold138783:73799:76699:- Length=2118 Score = 31.9 bits (34), Expect = 5.3 Identities = 26/32 (81%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 14 CGCCTCCTCCAAATCCGTCGCCAACTCCACCA 45 ||||||||||| | | || ||| |||||||| Sbjct 359 CGCCTCCTCCAGACTCATCTCCACCTCCACCA 390 > test21 on CCG009264.1 locus=scaffold138628:148454:148810:- Length=357 Score = 31.9 bits (34), Expect = 5.3 Identities = 22/25 (88%), Gaps = 0/25 (0%) Strand=Plus/Plus Query 414 GGTGGCTGGATTTGTTCTCTTCTTT 438 |||||||||||||| ||||| ||| Sbjct 330 GGTGGCTGGATTTGGGCTCTTGTTT 354 > test21 on CCG005484.1 locus=scaffold138281:246627:247307:- Length=681 Score = 31.9 bits (34), Expect = 5.3 Identities = 25/30 (83%), Gaps = 0/30 (0%) Strand=Plus/Minus Query 16 CCTCCTCCAAATCCGTCGCCAACTCCACCA 45 |||||||||||||| | ||| | |||||| Sbjct 362 CCTCCTCCAAATCCACCACCAGCCCCACCA 333 > test21 on CCG005469.1 locus=scaffold138281:111476:112246:+ Length=480 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 34 CCAACTCCACCATCGCC 50 ||||||||||||||||| Sbjct 152 CCAACTCCACCATCGCC 136 > test21 on CCG006136.1 locus=scaffold138412:10933:11358:- Length=426 Score = 31.9 bits (34), Expect = 5.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 18 TCCTCCAAATCCGTCGCCAACTCCACC 44 ||| |||| |||| | ||||||||||| Sbjct 345 TCCACCAAGTCCGCCACCAACTCCACC 319 > test21 on CCG004960.1 locus=scaffold137982:168085:169341:- Length=1257 Score = 31.9 bits (34), Expect = 5.3 Identities = 20/22 (91%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 328 GTGGTGAAGCCGGTGGAGCTGG 349 |||||| ||| ||||||||||| Sbjct 497 GTGGTGGAGCTGGTGGAGCTGG 518 Score = 31.9 bits (34), Expect = 5.3 Identities = 25/30 (83%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 330 GGTGAAGCCGGTGGAGCTGGAGACGCCGGT 359 |||| | |||||||||||||| ||| ||| Sbjct 973 GGTGTTGGCGGTGGAGCTGGAGGCGCTGGT 1002 > test21 on CCG004776.1 locus=scaffold137635:332522:336262:- Length=1908 Score = 31.9 bits (34), Expect = 5.3 Identities = 23/26 (88%), Gaps = 2/26 (8%) Strand=Plus/Minus Query 101 TCCGC--CTCGCTACGCTCTCGGACG 124 ||||| ||| ||||||||||||||| Sbjct 132 TCCGCAACTCCCTACGCTCTCGGACG 107 > test21 on CCG004255.1 locus=scaffold136756:144408:144908:- Length=501 Score = 31.9 bits (34), Expect = 5.3 Identities = 26/31 (84%), Gaps = 2/31 (6%) Strand=Plus/Plus Query 608 TGAATGCGATTAAG--TTTTATGAGGAGATG 636 |||||| ||||||| ||||||| |||| || Sbjct 104 TGAATGAGATTAAGTTTTTTATGTGGAGGTG 134 > test21 on CCG004622.1 locus=scaffold137502:24168:24476:- Length=309 Score = 31.9 bits (34), Expect = 5.3 Identities = 19/20 (95%), Gaps = 0/20 (0%) Strand=Plus/Plus Query 657 GTGGAGAGTTTGCAGGCTCA 676 ||||| |||||||||||||| Sbjct 212 GTGGAAAGTTTGCAGGCTCA 231 > test21 on CCG004321.1 locus=scaffold136918:76995:78443:+ Length=1449 Score = 31.9 bits (34), Expect = 5.3 Identities = 29/37 (78%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 219 CTTCAACTCCCCTCCCTTCCAATCCTTCACCGTCTTC 255 ||||||||||| | | ||| ||| || |||||||| Sbjct 252 CTTCAACTCCCTCCACCCCCACTCCCTCTCCGTCTTC 288 > test21 on CCG002289.1 locus=scaffold130172:10606:13686:- Length=1359 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 475 TATATTGAGGATCTGTT 491 ||||||||||||||||| Sbjct 1063 TATATTGAGGATCTGTT 1079 > test21 on CCG026858.1 locus=scaffold53487:85457:89434:- Length=1884 Score = 31.9 bits (34), Expect = 5.3 Identities = 25/29 (86%), Gaps = 1/29 (3%) Strand=Plus/Minus Query 371 AGCA-GGATGAGTTCAGATCGGCGGGGAG 398 |||| ||| | |||| ||||||||||||| Sbjct 68 AGCATGGAGGTGTTCGGATCGGCGGGGAG 40 > test21 on CCG008461.1 locus=scaffold13855:214374:223246:+ Length=4686 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 19 CCTCCAAATCCGTCGCC 35 ||||||||||||||||| Sbjct 2024 CCTCCAAATCCGTCGCC 2040 > test21 on CCG000632.1 locus=scaffold10887:31615:36480:+ Length=2526 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 140 AGCTCATCCACCAGATG 156 ||||||||||||||||| Sbjct 155 AGCTCATCCACCAGATG 139 > test21 on CCG029987.3 locus=scaffold7929:110407:111540:- Length=1134 Score = 31.9 bits (34), Expect = 5.3 Identities = 23/27 (85%), Gaps = 0/27 (0%) Strand=Plus/Minus Query 509 GGAGGAAGGGGTTTGGGAAGATGCTGC 535 || ||| | ||||||||||||||| || Sbjct 263 GGGGGATGTGGTTTGGGAAGATGCGGC 237 > test21 on CCG030344.1 locus=scaffold8140:325905:329146:+ Length=2223 Score = 31.9 bits (34), Expect = 5.3 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Minus Query 412 GTGGTGGCTGGATTTGT 428 ||||||||||||||||| Sbjct 2063 GTGGTGGCTGGATTTGT 2047 > test21 on CCG025417.1 locus=scaffold4128:219706:221664:- Length=1470 Score = 31.9 bits (34), Expect = 5.3 Identities = 24/27 (89%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 212 CCACTCTCTTCAACTCCCCTCCCTTCC 238 ||||||||||| |||| ||| |||||| Sbjct 126 CCACTCTCTTCTACTCACCT-CCTTCC 151 > test21 on CCG025415.1 locus=scaffold4128:208350:210307:- Length=1470 Score = 31.9 bits (34), Expect = 5.3 Identities = 24/27 (89%), Gaps = 1/27 (4%) Strand=Plus/Plus Query 212 CCACTCTCTTCAACTCCCCTCCCTTCC 238 ||||||||||| |||| ||| |||||| Sbjct 126 CCACTCTCTTCTACTCACCT-CCTTCC 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21787450920 Database: Rhodiola_rosea.cds Posted date: Jan 8, 2019 4:45 PM Number of letters in database: 32,891,328 Number of sequences in database: 31,517 Matrix: blastn matrix 2 -3 Gap Penalties: Existence: 5, Extension: 2