BLAST Results
BLASTX 2.2.28+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepidium_meyenii.pep 96,417 sequences; 37,149,326 total letters Query= evm.model.C3397927.1 locus=C3397927:14:175:+ Length=162 Score E Sequences producing significant alignments: (Bits) Value evm.model.C3397927.1 locus=C3397927:14:175:+ [translate_table:... 105 7e-31 evm.model.C3393219.1 locus=C3393219:14:175:+ [translate_table:... 105 7e-31 evm.model.C3664925.1 locus=C3664925:8:169:+ [translate_table: ... 103 4e-30 evm.model.scaffold2156.1 locus=scaffold2156:13402:17580:+ [tra... 99.4 3e-25 evm.model.scaffold3166.1 locus=scaffold3166:4151:9049:- [trans... 98.6 6e-25 evm.model.scaffold498.134 locus=scaffold498:646081:648505:- [t... 52.4 6e-09 evm.model.scaffold295.658 locus=scaffold295:3780319:3784847:+ ... 31.2 0.092 evm.model.scaffold2156.3 locus=scaffold2156:8625:10607:+ [tran... 30.0 0.17 evm.model.scaffold236.365 locus=scaffold236:1781413:1782896:+ ... 27.7 1.3 evm.model.scaffold34.579 locus=scaffold34:4532422:4536153:- [t... 26.9 2.2 evm.model.scaffold428.187 locus=scaffold428:1086587:1088823:- ... 25.8 4.1 evm.model.scaffold1144.91 locus=scaffold1144:117000:120044:+ [... 25.4 6.2 > evm.model.C3397927.1 on evm.model.C3397927.1 locus=C3397927:14:175:+ [translate_table: standard] Length=53 Score = 105 bits (263), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%) Frame = +1 Query 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR 159 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR Sbjct 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR 53 > evm.model.C3397927.1 on evm.model.C3393219.1 locus=C3393219:14:175:+ [translate_table: standard] Length=53 Score = 105 bits (263), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 53/53 (100%), Positives = 53/53 (100%), Gaps = 0/53 (0%) Frame = +1 Query 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR 159 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR Sbjct 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR 53 > evm.model.C3397927.1 on evm.model.C3664925.1 locus=C3664925:8:169:+ [translate_table: standard] Length=53 Score = 103 bits (258), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 52/53 (98%), Positives = 52/53 (98%), Gaps = 0/53 (0%) Frame = +1 Query 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAVKQKR 159 MSTTGRGRHSVLRIFKGRRGRTGH ATCGALPAAGPYLRLSRFQGGQAVKQKR Sbjct 1 MSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR 53 > evm.model.C3397927.1 on evm.model.scaffold2156.1 locus=scaffold2156:13402:17580:+ [translate_table: standard] Length=724 Score = 99.4 bits (246), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 46/47 (98%), Positives = 46/47 (98%), Gaps = 0/47 (0%) Frame = +3 Query 3 EYDRAWAALGPPDFQGPPGAHRTPSDVRCSSSRWTLPPAEPFPGWAG 143 EYDRAWAALGPPDFQGPPGAHRTP DVRCSSSRWTLPPAEPFPGWAG Sbjct 98 EYDRAWAALGPPDFQGPPGAHRTPRDVRCSSSRWTLPPAEPFPGWAG 144 > evm.model.C3397927.1 on evm.model.scaffold3166.1 locus=scaffold3166:4151:9049:- [translate_table: standard] Length=762 Score = 98.6 bits (244), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 47/49 (96%), Positives = 48/49 (98%), Gaps = 0/49 (0%) Frame = +1 Query 1 MSTTGRGRHSVLRIFKGRRGRTGHQATCGALPAAGPYLRLSRFQGGQAV 147 MSTTGRGRHSVLRIFKGRRGRTGH ATCGALPAAGPYLRLSRFQGGQA+ Sbjct 165 MSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQAI 213 > evm.model.C3397927.1 on evm.model.scaffold498.134 locus=scaffold498:646081:648505:- [translate_table: standard] Length=435 Score = 52.4 bits (124), Expect = 6e-09, Method: Composition-based stats. Identities = 23/24 (96%), Positives = 23/24 (96%), Gaps = 0/24 (0%) Frame = -3 Query 142 PAHPGNGSAGGRVQRLEEHRTSLG 71 PAHPGNGSAGGRVQRLEEHRTS G Sbjct 366 PAHPGNGSAGGRVQRLEEHRTSRG 389 > evm.model.C3397927.1 on evm.model.scaffold295.658 locus=scaffold295:3780319:3784847:+ [translate_table: standard] Length=1203 Score = 31.2 bits (69), Expect = 0.092, Method: Composition-based stats. Identities = 18/37 (49%), Positives = 20/37 (54%), Gaps = 8/37 (22%) Frame = +2 Query 41 FSRAAGGAPDTKRRAVLFQPLDPTSG*AVSRVGRLLN 151 FSR G + F+ LDPTSG V RV RLLN Sbjct 559 FSRTQNG--------ISFRELDPTSGKTVERVYRLLN 587 > evm.model.C3397927.1 on evm.model.scaffold2156.3 locus=scaffold2156:8625:10607:+ [translate_table: standard] Length=192 Score = 30.0 bits (66), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 20/41 (49%), Gaps = 6/41 (15%) Frame = +3 Query 3 EYDRAWAALGPPDFQGPPGAHRTPSDVRCSSSRWTLPPAEP 125 EYD A P DFQG AHRT RC W LP +P Sbjct 147 EYDLAUELFLPADFQGTSRAHRT--QQRC----WALPAIKP 181 Score = 28.1 bits (61), Expect = 0.66, Method: Compositional matrix adjust. Identities = 13/21 (62%), Positives = 14/21 (67%), Gaps = 0/21 (0%) Frame = +1 Query 73 QATCGALPAAGPYLRLSRFQG 135 Q C ALPA P LR +RFQG Sbjct 170 QQRCWALPAIKPULRTNRFQG 190 > evm.model.C3397927.1 on evm.model.scaffold236.365 locus=scaffold236:1781413:1782896:+ [translate_table: standard] Length=420 Score = 27.7 bits (60), Expect = 1.3, Method: Composition-based stats. Identities = 15/52 (29%), Positives = 23/52 (44%), Gaps = 6/52 (12%) Frame = -1 Query 141 LPTLETAQPEVGSSGWKSTARRL------VSGAPPAALENPEDRVPPTPGRT 4 LPT+ T +P S GW ++ + + G LENP P + G + Sbjct 57 LPTISTKRPTSFSGGWSGCSKSIANLKDVIHGGQQRRLENPPCSSPRSIGSS 108 > evm.model.C3397927.1 on evm.model.scaffold34.579 locus=scaffold34:4532422:4536153:- [translate_table: standard] Length=522 Score = 26.9 bits (58), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/45 (36%), Positives = 20/45 (44%), Gaps = 0/45 (0%) Frame = -1 Query 141 LPTLETAQPEVGSSGWKSTARRLVSGAPPAALENPEDRVPPTPGR 7 L T +TA+P+ S + V PA ED VPP P R Sbjct 100 LKTSKTAEPDETSCNDIDKSSSQVESEKPAEAAEKEDEVPPLPQR 144 > evm.model.C3397927.1 on evm.model.scaffold428.187 locus=scaffold428:1086587:1088823:- [translate_table: standard] Length=266 Score = 25.8 bits (55), Expect = 4.1, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 0/20 (0%) Frame = +2 Query 56 GGAPDTKRRAVLFQPLDPTS 115 GG P +R VL +P+DPTS Sbjct 72 GGLPPPRRTYVLLRPIDPTS 91 > evm.model.C3397927.1 on evm.model.scaffold1144.91 locus=scaffold1144:117000:120044:+ [translate_table: standard] Length=1014 Score = 25.4 bits (54), Expect = 6.2, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 0/25 (0%) Frame = +2 Query 11 PGVGGTRSSGFSRAAGGAPDTKRRA 85 PG G T RAAGG +RRA Sbjct 989 PGAGQTXRQATGRAAGGQLHAQRRA 1013 Lambda K H a alpha 0.318 0.134 0.401 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 932743809 Database: Lepidium_meyenii.pep Posted date: Jan 8, 2019 3:52 PM Number of letters in database: 37,149,326 Number of sequences in database: 96,417 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 12 Window for multiple hits: 40