BLAST Results




TBLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Salvia_miltiorrhiza.fa
           28,056 sequences; 659,761,904 total letters



Query= evm.model.C151063.1 gene=EVM%20prediction%20C151063.1
[translate_table: standard]

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  C151063                                                              145    2e-41
  scaffold12194                                                       90.9    2e-20
  scaffold9630                                                        90.9    2e-20
  scaffold6353                                                        90.1    4e-20
  scaffold1675                                                        89.7    5e-20
  scaffold10681                                                       56.6    9e-09


> evm.model.C151063.1 on C151063
Length=1088

 Score =  145 bits (365),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
 Frame = -1

Query  1    MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVaggrgelll  60
            MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVAGGRGELLL
Sbjct  335  MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVAGGRGELLL  156

Query  61   laaPVCWrrrggrrgrNVWSVESAECQNVWSIDGARAA  98
            LAAPVCWRRRGGRRGRNVWSVESAECQNVWSIDGARAA
Sbjct  155  LAAPVCWRRRGGRRGRNVWSVESAECQNVWSIDGARAA  42


> evm.model.C151063.1 on scaffold12194
Length=10992

 Score = 90.9 bits (224),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 48/54 (89%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = -3

Query  1     MCFVGEGRRGCTGWLREDEGGRAQV---LPACWRRAKEKGAGVASVWRRGASTV  51
             MCFVGEGRRGCTGWLRED GGRAQV    PACWRRAKEKGAGVASVWRRGAS V
Sbjct  3058  MCFVGEGRRGCTGWLREDAGGRAQVSPASPACWRRAKEKGAGVASVWRRGASAV  2897


> evm.model.C151063.1 on scaffold9630
Length=327135

 Score = 90.9 bits (224),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 48/54 (89%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = -1

Query  1       MCFVGEGRRGCTGWLREDEGGRAQV---LPACWRRAKEKGAGVASVWRRGASTV  51
               MCFVGEGRRGCTGWLRED GGRAQV    PACWRRAKEKGAGVASVWRRGAS V
Sbjct  144312  MCFVGEGRRGCTGWLREDAGGRAQVSPASPACWRRAKEKGAGVASVWRRGASAV  144151


> evm.model.C151063.1 on scaffold6353
Length=119594

 Score = 90.1 bits (222),  Expect = 4e-20, Method: Compositional matrix adjust.
 Identities = 48/54 (89%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = -1

Query  1      MCFVGEGRRGCTGWLREDEGGRAQV---LPACWRRAKEKGAGVASVWRRGASTV  51
              MCFVGEGRRGCTGWLRED GGRAQV    PACWRRAKEKGAGVASVWRRGAS V
Sbjct  60971  MCFVGEGRRGCTGWLREDAGGRAQVSPASPACWRRAKEKGAGVASVWRRGASAV  60810


> evm.model.C151063.1 on scaffold1675
Length=226247

 Score = 89.7 bits (221),  Expect = 5e-20, Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = +2

Query  1      MCFVGEGRRGCTGWLREDEGGRAQVL---PACWRRAKEKGAGVASVWRRGASTV  51
              MCFVGEGRRGCTGWLRED GGRAQVL   PACWRRAK+KGAGVASVWRRGA  V
Sbjct  56444  MCFVGEGRRGCTGWLREDAGGRAQVLPASPACWRRAKKKGAGVASVWRRGAFAV  56605


> evm.model.C151063.1 on scaffold10681
Length=7436

 Score = 56.6 bits (135),  Expect = 9e-09, Method: Compositional matrix adjust.
 Identities = 26/31 (84%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
 Frame = +2

Query  1     MCFVGEGRRGCTGWLREDEGGRAQVLPACWR  31
             MCFVGEG R CTGWLRED GGRAQV P CWR
Sbjct  7340  MCFVGEGMRECTGWLREDAGGRAQVSPTCWR  7432



Lambda      K        H        a         alpha
   0.321    0.133    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5446813650


  Database: Salvia_miltiorrhiza.fa
    Posted date:  Jan 8, 2019  5:22 AM
  Number of letters in database: 659,761,904
  Number of sequences in database:  28,056



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40