BLAST Results




TBLASTN 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Salvia_miltiorrhiza.cds
           34,575 sequences; 37,274,490 total letters



Query= evm.model.C151063.1 gene=EVM%20prediction%20C151063.1
[translate_table: standard]

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  evm.model.C151063.1 gene=EVM%20prediction%20C151063.1                145    2e-45
  evm.model.scaffold9630.14 gene=EVM%20prediction%20scaffold9630.14   90.9    2e-24
  evm.model.scaffold1675.7 gene=EVM%20prediction%20scaffold1675.7     89.7    5e-24
  evm.model.scaffold11676.1 gene=EVM%20prediction%20scaffold11676.1   26.2    4.4  
  evm.model.scaffold7937.1 gene=EVM%20prediction%20scaffold7937.1     25.4    6.3  
  evm.model.scaffold752.54 gene=EVM%20prediction%20scaffold752.54     25.4    7.2  


> evm.model.C151063.1 on evm.model.C151063.1 gene=EVM%20prediction%20C151063.1
Length=297

 Score =  145 bits (365),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 0/98 (0%)
 Frame = +1

Query  1    MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVaggrgelll  60
            MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVAGGRGELLL
Sbjct  1    MCFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKGAGVASVWRRGASTVAGGRGELLL  180

Query  61   laaPVCWrrrggrrgrNVWSVESAECQNVWSIDGARAA  98
            LAAPVCWRRRGGRRGRNVWSVESAECQNVWSIDGARAA
Sbjct  181  LAAPVCWRRRGGRRGRNVWSVESAECQNVWSIDGARAA  294


> evm.model.C151063.1 on evm.model.scaffold9630.14 gene=EVM%20prediction%20scaffold9630.14
Length=276

 Score = 90.9 bits (224),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 48/54 (89%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = +1

Query  1    MCFVGEGRRGCTGWLREDEGGRAQV---LPACWRRAKEKGAGVASVWRRGASTV  51
            MCFVGEGRRGCTGWLRED GGRAQV    PACWRRAKEKGAGVASVWRRGAS V
Sbjct  1    MCFVGEGRRGCTGWLREDAGGRAQVSPASPACWRRAKEKGAGVASVWRRGASAV  162


> evm.model.C151063.1 on evm.model.scaffold1675.7 gene=EVM%20prediction%20scaffold1675.7
Length=276

 Score = 89.7 bits (221),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 48/54 (89%), Gaps = 3/54 (6%)
 Frame = +1

Query  1    MCFVGEGRRGCTGWLREDEGGRAQVL---PACWRRAKEKGAGVASVWRRGASTV  51
            MCFVGEGRRGCTGWLRED GGRAQVL   PACWRRAK+KGAGVASVWRRGA  V
Sbjct  1    MCFVGEGRRGCTGWLREDAGGRAQVLPASPACWRRAKKKGAGVASVWRRGAFAV  162


> evm.model.C151063.1 on evm.model.scaffold11676.1 gene=EVM%20prediction%20scaffold11676.1
Length=2106

 Score = 26.2 bits (56),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 18/42 (43%), Positives = 23/42 (55%), Gaps = 3/42 (7%)
 Frame = +3

Query  9     RGCTGWLREDEGGRAQV-LPACWRRAKEKGAGVASVWRRGAS  49
             RGC+GWL+ED   R +   P   RR   KG G  + W R +S
Sbjct  1806  RGCSGWLKEDPSHRGRNGCPTKSRR--HKGVGHIA*WERVSS  1925


> evm.model.C151063.1 on evm.model.scaffold7937.1 gene=EVM%20prediction%20scaffold7937.1
Length=486

 Score = 25.4 bits (54),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (59%), Gaps = 0/29 (0%)
 Frame = +1

Query  16   REDEGGRAQVLPACWRRAKEKGAGVASVW  44
            R D+ GR + LP CW    E+G   A+V+
Sbjct  70   RRDDCGRRRWLPCCWHAVCERGRTAAAVY  156


> evm.model.C151063.1 on evm.model.scaffold752.54 gene=EVM%20prediction%20scaffold752.54
Length=849

 Score = 25.4 bits (54),  Expect = 7.2, Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 20/36 (56%), Gaps = 2/36 (6%)
 Frame = +3

Query  2    CFVGEGRRGCTGWLREDEGGRAQVLPACWRRAKEKG  37
            C V  G RG +GWL    GGR Q+  A W R +E G
Sbjct  429  CAVDGGSRGGSGWLLAGAGGRRQM--AVWPRRREVG  530



Lambda      K        H        a         alpha
   0.321    0.133    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 313357455


  Database: Salvia_miltiorrhiza.cds
    Posted date:  Jan 8, 2019  5:22 AM
  Number of letters in database: 37,274,490
  Number of sequences in database:  34,575



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40