BLAST Results




BLASTX 2.2.28+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: Calotropis_gigantea.pep
           20,832 sequences; 9,345,609 total letters



Query= test9

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cal_g013864.t1                                                       568    0.0  
  cal_g014825.t1                                                      30.0    0.60 
  cal_g004166.t1                                                      30.0    1.3  
  cal_g012152.t1                                                      30.0    1.3  
  cal_g006241.t1                                                      29.6    1.9  
  cal_g012602.t1                                                      27.7    7.0  


> test9 on cal_g013864.t1
Length=685

 Score =  568 bits (1464),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 280/280 (100%), Positives = 280/280 (100%), Gaps = 0/280 (0%)
 Frame = +1

Query  1    MEVSFVSKARTAFHSAAAKAEKVFADIKKSDSSADRAEHSNAQLQKELTPDSVNTKEDDS  180
            MEVSFVSKARTAFHSAAAKAEKVFADIKKSDSSADRAEHSNAQLQKELTPDSVNTKEDDS
Sbjct  1    MEVSFVSKARTAFHSAAAKAEKVFADIKKSDSSADRAEHSNAQLQKELTPDSVNTKEDDS  60

Query  181  EYCGGTKQSKRKPPPIKTKQDWQERFKNIRIGKRGNEDTEKSENSKMAYAIFDENLYLIR  360
            EYCGGTKQSKRKPPPIKTKQDWQERFKNIRIGKRGNEDTEKSENSKMAYAIFDENLYLIR
Sbjct  61   EYCGGTKQSKRKPPPIKTKQDWQERFKNIRIGKRGNEDTEKSENSKMAYAIFDENLYLIR  120

Query  361  EREVFHSEESKSGSGGQDFDSSNANIIPSTSVIRQLAVAIETSKNYNSMMDLMASSRDSS  540
            EREVFHSEESKSGSGGQDFDSSNANIIPSTSVIRQLAVAIETSKNYNSMMDLMASSRDSS
Sbjct  121  EREVFHSEESKSGSGGQDFDSSNANIIPSTSVIRQLAVAIETSKNYNSMMDLMASSRDSS  180

Query  541  PVRERAALGFSAVKSLVLREKEEKLVTEFGTNEKVLSLIKSLLHAEGQSLIGRDEREAGE  720
            PVRERAALGFSAVKSLVLREKEEKLVTEFGTNEKVLSLIKSLLHAEGQSLIGRDEREAGE
Sbjct  181  PVRERAALGFSAVKSLVLREKEEKLVTEFGTNEKVLSLIKSLLHAEGQSLIGRDEREAGE  240

Query  721  ITNMSSLIKDIHGAPPESFVVKLSEAIGSLKTLRKMASFW  840
            ITNMSSLIKDIHGAPPESFVVKLSEAIGSLKTLRKMASFW
Sbjct  241  ITNMSSLIKDIHGAPPESFVVKLSEAIGSLKTLRKMASFW  280


> test9 on cal_g014825.t1
Length=130

 Score = 30.0 bits (66),  Expect = 0.60, Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 0/37 (0%)
 Frame = -2

Query  734  DIFVISPASRSSLPIRDCPSACSSDLIKESTFSLVPN  624
             IF+  P +RS     DC +      +KE+ FS++ N
Sbjct  66   HIFLSCPYARSGWQFADCQTLMQKLQVKEANFSMIEN  102


> test9 on cal_g004166.t1
Length=474

 Score = 30.0 bits (66),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 14/39 (36%), Positives = 24/39 (62%), Gaps = 0/39 (0%)
 Frame = -2

Query  740  KDDIFVISPASRSSLPIRDCPSACSSDLIKESTFSLVPN  624
            K D+ VI+P+S S +P+ DC S+    +  E+  S++ N
Sbjct  391  KADMIVINPSSWSMVPLHDCISSLVYSMRTENIVSVMCN  429


> test9 on cal_g012152.t1
Length=448

 Score = 30.0 bits (66),  Expect = 1.3, Method: Compositional matrix adjust.
 Identities = 18/52 (35%), Positives = 29/52 (56%), Gaps = 1/52 (2%)
 Frame = +1

Query  502  SMMDLMASSRDSSPVRERAALGFSAVKSLVLREKEEKLVTEFGT-NEKVLSL  654
            S+M  +  +   +PVRE A L F    +LVL + + K+  + GT N+ V+ L
Sbjct  86   SIMRWVWDANRGNPVRENATLTFGRNGNLVLADVDGKVAWQTGTANKGVVGL  137


> test9 on cal_g006241.t1
Length=472

 Score = 29.6 bits (65),  Expect = 1.9, Method: Compositional matrix adjust.
 Identities = 19/53 (36%), Positives = 30/53 (57%), Gaps = 8/53 (15%)
 Frame = +1

Query  220  PPIKTKQDWQERFKNIRIGKRGNEDTEKSENSKM-AY----AIFDENLYLIRE  363
            P +++KQ   E+ +N +IG  G++D      S M AY     + D NL+LIR+
Sbjct  216  PCLRSKQ---EKLRNGKIGNSGDDDRLDCLTSLMEAYQRDAGVGDSNLFLIRD  265


> test9 on cal_g012602.t1
Length=583

 Score = 27.7 bits (60),  Expect = 7.0, Method: Compositional matrix adjust.
 Identities = 20/48 (42%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query  304  SENSKMAYAIFDENLYLIRE-REVFHSEESKSG-SGGQDFDSSNANII  441
            SEN K+    FD+   LI    ++ H EE  S  S G  FDS N+NI+
Sbjct  313  SENFKLMSPTFDKRDALITSMNQIHHKEEDASTISMGITFDSGNSNIL  360



Lambda      K        H        a         alpha
   0.309    0.125    0.333    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1351615608


  Database: Calotropis_gigantea.pep
    Posted date:  Jan 8, 2019  1:06 AM
  Number of letters in database: 9,345,609
  Number of sequences in database:  20,832



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 12
Window for multiple hits: 40